View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17245_low_5 (Length: 433)

Name: NF17245_low_5
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17245_low_5
NF17245_low_5
[»] chr8 (4 HSPs)
chr8 (184-415)||(19971102-19971333)
chr8 (184-415)||(21021476-21021707)
chr8 (187-287)||(19970556-19970655)
chr8 (187-287)||(21022154-21022253)
[»] chr4 (9 HSPs)
chr4 (217-415)||(45110897-45111095)
chr4 (52-165)||(3091698-3091811)
chr4 (209-286)||(13387162-13387238)
chr4 (1-38)||(3091831-3091868)
chr4 (201-255)||(13371524-13371578)
chr4 (201-255)||(13381725-13381779)
chr4 (220-286)||(45111536-45111601)
chr4 (187-252)||(13372585-13372650)
chr4 (187-252)||(13382786-13382851)
[»] chr6 (2 HSPs)
chr6 (187-415)||(8615438-8615667)
chr6 (188-251)||(8616124-8616186)
[»] chr3 (3 HSPs)
chr3 (209-415)||(53395949-53396155)
chr3 (187-240)||(35835421-35835474)
chr3 (187-240)||(35892138-35892191)
[»] chr2 (3 HSPs)
chr2 (187-415)||(8143162-8143392)
chr2 (187-286)||(15554991-15555089)
chr2 (216-258)||(15554274-15554316)
[»] scaffold0538 (2 HSPs)
scaffold0538 (187-286)||(3484-3582)
scaffold0538 (184-237)||(7884-7937)
[»] chr5 (1 HSPs)
chr5 (65-141)||(29686249-29686326)
[»] chr1 (1 HSPs)
chr1 (67-139)||(45064073-45064146)
[»] chr7 (1 HSPs)
chr7 (211-267)||(43524626-43524682)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 184 - 415
Target Start/End: Complemental strand, 19971333 - 19971102
Alignment:
Q  184 gaaggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatca 283  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19971333 gaaggatattttgactccaagagtaactcttttgagttactctaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatca 19971234  T
Q  284 tcttcatgatcacgcactattatcctctacatcacttccttgttgctgagtcactaagaaaaatgaataagttgtttgggtcttttttctcgatccttgc 383  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19971233 tcttcatgatcacgcactattatcctctacatcgcttccttgttgctgcgtcactaagaaaaatgaatacgttgtttgggtcttttttctcgatccttgc 19971134  T
Q  384 acatatgttctcaaagattaacaatagtcatg 415  Q
    ||||||||||||||||||||||||||||||||    
T  19971133 acatatgttctcaaagattaacaatagtcatg 19971102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 184 - 415
Target Start/End: Original strand, 21021476 - 21021707
Alignment:
Q  184 gaaggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatca 283  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21021476 gaaggatattttgactccaagagtaactcttttgagttactctaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatca 21021575  T
Q  284 tcttcatgatcacgcactattatcctctacatcacttccttgttgctgagtcactaagaaaaatgaataagttgtttgggtcttttttctcgatccttgc 383  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21021576 tcttcatgatcacgcactattatcctctacatcgcttccttgttgctgcgtcactaagaaaaatgaatacgttgtttgggtcttttttctcgatccttgc 21021675  T
Q  384 acatatgttctcaaagattaacaatagtcatg 415  Q
    ||||||||||||||||||||||||||||||||    
T  21021676 acatatgttctcaaagattaacaatagtcatg 21021707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 19970556 - 19970655
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||  |||| ||||| |||||||||||||||    
T  19970556 ggatattttgactccaagagtaactcttttgagttactccaaatcacatccctccatttagttttaatctaaccatcc-taattgattattaaatcatct 19970654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 21022253 - 21022154
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||  |||| ||||| |||||||||||||||    
T  21022253 ggatattttgactccaagagtaactcttttgagttactccaaatcacatccctccatttagttttaatctaaccatcc-taattgattattaaatcatct 21022155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 217 - 415
Target Start/End: Original strand, 45110897 - 45111095
Alignment:
Q  217 gagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatcttcatgatcacgcactattatcctctacatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45110897 gagttactccaaatcacatccctctattttgttttaatccaacgattcttaattaattattaaatcatcttcatgatcacgcactattatcctctacatc 45110996  T
Q  317 acttccttgttgctgagtcactaagaaaaatgaataagttgtttgggtcttttttctcgatccttgcacatatgttctcaaagattaacaatagtcatg 415  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45110997 acttccttgttgccgcgtcactaagaaaaatgaatacgttgtttgggtcttttttctcgatccttgcacatatgttctcaaagattaacaatagtcatg 45111095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 3091811 - 3091698
Alignment:
Q  52 taatataaattattctttttgagtgacatcaataaagtagaattcttatagttaaattagtttaagatataattggaagtaaaaaagtcaaccaaaactc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3091811 taatataaattattctttttgagtgacatcaataaagtagaattcttatagttaaattagtttaagatataattggaagtaaaaaagtcaaccaaaactc 3091712  T
Q  152 atgcattctctctc 165  Q
    ||||||||||||||    
T  3091711 atgcattctctctc 3091698  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 13387162 - 13387238
Alignment:
Q  209 actcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| || |||  ||||||||||||| ||| ||||    
T  13387162 actcttttgagttactccaaatcacatccgtccattttgttttaatcaaacgat-gttaattaattatttaattatct 13387238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3091868 - 3091831
Alignment:
Q  1 tcccataaaaagaatatataacaaatataatatttgct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3091868 tcccataaaaagaatatataacaaatataatatttgct 3091831  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 13371524 - 13371578
Alignment:
Q  201 caagagtgactcttttgagttactccaaatcacatccctctattttgttttaatc 255  Q
    ||||||| ||||||||||||||||||||||||||||| || || || ||||||||    
T  13371524 caagagtaactcttttgagttactccaaatcacatccgtccatattcttttaatc 13371578  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 13381725 - 13381779
Alignment:
Q  201 caagagtgactcttttgagttactccaaatcacatccctctattttgttttaatc 255  Q
    ||||||| ||||||||||||||||||||||||||||| || || || ||||||||    
T  13381725 caagagtaactcttttgagttactccaaatcacatccgtccatattcttttaatc 13381779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 45111601 - 45111536
Alignment:
Q  220 ttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    ||||||||||||||||||||| |||| ||||||||| ||  |||| ||||| |||||||||||||||    
T  45111601 ttactccaaatcacatccctccatttagttttaatctaaccatcc-taattgattattaaatcatct 45111536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 13372585 - 13372650
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgtttta 252  Q
    |||||| || ||| ||||||| |||||||||||||||| |||||||||| | || |||||| ||||    
T  13372585 ggatatattgacttcaagagtaactcttttgagttactgcaaatcacatacgtcgattttgcttta 13372650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 13382786 - 13382851
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgtttta 252  Q
    |||||| || ||| ||||||| |||||||||||||||| |||||||||| | || |||||| ||||    
T  13382786 ggatatattgacttcaagagtaactcttttgagttactgcaaatcacatacgtcgattttgcttta 13382851  T

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Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 187 - 415
Target Start/End: Original strand, 8615438 - 8615667
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||  || |||||||||||||||||||||||||||    
T  8615438 ggatattttgactccaatagtaactcttttgagttactccaaatcacatccctccattgtgttttaatttaacgatccttaattaattattaaatcatct 8615537  T
Q  287 tcatgatcacgcactattatcctctacatcacttccttgttgctgagtcactaagaaaaatgaataagttgtttgggtcttttttctcgatccttgcaca 386  Q
    ||||||||| ||||||||||| |||||||  || |||| |||| | |||||||||||||||||||| | ||||  | ||||||| ||| |||| | ||      
T  8615538 tcatgatcaagcactattatcttctacattgctcccttattgcggtgtcactaagaaaaatgaatacgctgttaagatctttttcctcaatccatccatg 8615637  T
Q  387 tatgttctcaaagattaac-aatagtcatg 415  Q
    ||||||||||||||||| | ||||||||||    
T  8615638 tatgttctcaaagattatcaaatagtcatg 8615667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 8616186 - 8616124
Alignment:
Q  188 gatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgtttt 251  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  8616186 gatattttgactccaagagtaactcttttgagttactccaaatcacat-cctccattttgtttt 8616124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 209 - 415
Target Start/End: Original strand, 53395949 - 53396155
Alignment:
Q  209 actcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatcttcatgatcacgcactattatcc 308  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53395949 actcttttgagttactccaaatcacatccctccattatattttaatctaccgatccttaattaattattaaatcatcttcatgatcaagcactattatcc 53396048  T
Q  309 tctacatcacttccttgttgctgagtcactaagaaaaatg-aataagttgtttgggtcttttttctcgatccttgcacatatgttctcaaagattaacaa 407  Q
    |||||||| || |||| |||| | |||||||||||||||| ||||  |||||   ||| |||| ||| |||||| ||  ||||||||||||||||| |||    
T  53396049 tctacatcgctcccttattgcagcgtcactaagaaaaatgaaatacattgttaaagtc-ttttcctcaatccttccatgtatgttctcaaagattatcaa 53396147  T
Q  408 tagtcatg 415  Q
    ||||||||    
T  53396148 tagtcatg 53396155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 35835421 - 35835474
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctc 240  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  35835421 ggatattttgactccaagagtaactcttttgagttactccaaatcacatccctc 35835474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 35892138 - 35892191
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctc 240  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  35892138 ggatattttgactccaagagtaactcttttgagttactccaaatcacatccctc 35892191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 187 - 415
Target Start/End: Complemental strand, 8143392 - 8143162
Alignment:
Q  187 ggatattttaactccaag-agtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattatt-aaatcat 284  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||  ||| |||||||||| |  |||||||||||||| ||| |||||||    
T  8143392 ggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatctaccgatccttaattaatcatttaaatcat 8143293  T
Q  285 cttcatgatcacgcactattatcctctacatcacttccttgttgctgagtcactaagaaaaatg-aataagttgtttgggtcttttttctcgatccttgc 383  Q
    ||||||||||| |||||||||||||||||||| || |||| |||| | |||||||||||||||| ||||  |||||   ||| |||| |||||||||| |    
T  8143292 cttcatgatcaagcactattatcctctacatcgctcccttattgcagcgtcactaagaaaaatgaaatacattgttaaagtc-ttttcctcgatccttcc 8143194  T
Q  384 acatatgttctcaaagattaacaatagtcatg 415  Q
    |  ||||||||||||||||| |||||||||||    
T  8143193 atgtatgttctcaaagattatcaatagtcatg 8143162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 15555089 - 15554991
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||    
T  15555089 ggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacgatgc-taattaattattaaatcatct 15554991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 15554274 - 15554316
Alignment:
Q  216 tgagttactccaaatcacatccctctattttgttttaatccaa 258  Q
    |||| ||||||||||||||||| || |||||||||||||||||    
T  15554274 tgagctactccaaatcacatccttccattttgttttaatccaa 15554316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 3582 - 3484
Alignment:
Q  187 ggatattttaactccaagagtgactcttttgagttactccaaatcacatccctctattttgttttaatccaatgatccttaattaattattaaatcatct 286  Q
    |||||| || ||| ||||||| ||||||||||||||||||||||||||||| || || || |||||||| ||  ||  |||||||||||| |||||||||    
T  3582 ggatatattgacttcaagagtaactcttttgagttactccaaatcacatccgtccatattcttttaatcaaacaat-gttaattaattatcaaatcatct 3484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 7937 - 7884
Alignment:
Q  184 gaaggatattttaactccaagagtgactcttttgagttactccaaatcacatcc 237  Q
    ||||||||| || ||| ||||||| |||||||||||||||| ||||||||||||    
T  7937 gaaggatatattgacttcaagagtaactcttttgagttacttcaaatcacatcc 7884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 29686249 - 29686326
Alignment:
Q  65 tctttttgagtgacatcaataaagtagaattcttatagttaaattagtttaaga-tataattggaagtaaaaaagtca 141  Q
    ||||||||| ||||| ||||||| ||  ||||||||||| ||||| |||||||| ||||||| | ||| |||||||||    
T  29686249 tctttttgaatgacaccaataaattaacattcttatagtaaaatttgtttaagagtataattaggagtgaaaaagtca 29686326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 45064073 - 45064146
Alignment:
Q  67 tttttgagtgacatcaataaagtagaattcttatagttaaattagttt-aagatataattggaagtaaaaaagt 139  Q
    ||||||| ||||| ||||||| ||  ||||||||||||||||| |||| ||||||||||||  ||| |||||||    
T  45064073 tttttgaatgacaccaataaaataatattcttatagttaaatttgtttaaagatataattgatagtgaaaaagt 45064146  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 43524682 - 43524626
Alignment:
Q  211 tcttttgagttactccaaatcacatccctctattttgttttaatccaatgatcctta 267  Q
    |||||||||| ||||||||||||  ||||| ||||| |||||||| |||| ||||||    
T  43524682 tcttttgagtcactccaaatcactaccctccattttattttaatctaatggtcctta 43524626  T

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