View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_6 (Length: 401)
Name: NF17245_low_6
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 384
Target Start/End: Original strand, 24677273 - 24677633
Alignment:
| Q |
24 |
tttaccagattcaaagtttccagaatcttcgcgaaaacatcgtcgaaatttctctcgttggatacctcttcttccaactgaatcttctcataatcataat |
123 |
Q |
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| T |
24677273 |
tttaccagattcaaagtttccagaatcttcgcgaaaacatcgtcgaaatttctctcgttggatacctcttcttccaactgaatcttctcataatcataat |
24677372 |
T |
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| Q |
124 |
cggctgcatgctttgaatttgaagaaggctaagtcatcacgggttagtccggtgagccgacgtaaattgagtttttcaaatggcgaacggtctaactcat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24677373 |
cggctgcatgctttgaatttgaagaaggctaagtcagcacgggttagtccggtgagccgacgtaaattgagtttctcaaatggcgaacggtctaactcat |
24677472 |
T |
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| Q |
224 |
tcgtcggaacggaggaatatgtttcaccggaggttgttcgcggtgacggacacgagtttgccgttgattggtgggcgttagggatacttacatacgaaat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24677473 |
tcgtcggaacggaggaatatgtttcaccggaggttgttcgcggtgacggacacgagtttgccgttgattggtgggcattagggatacttacatacgaaat |
24677572 |
T |
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| Q |
324 |
gctatatggtacaacaccgtttaaggggaagaataggaaagaaacgtttaaaaatgttctg |
384 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24677573 |
gctttatggtacaacaccgtttaaggggaagaataggaaagaaacgtttaaaaatgttctg |
24677633 |
T |
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