View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_8 (Length: 380)
Name: NF17245_low_8
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 60 - 362
Target Start/End: Complemental strand, 21989534 - 21989233
Alignment:
| Q |
60 |
aaaacttaaatgatacttgttcattcaagtttatggagtacattaaatacaatcatatattcaattgctgaaaacataaatgacgaatctgtcagtaaac |
159 |
Q |
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| T |
21989534 |
aaaacttaaatgatatttgttcattcaagtttatggagtacattaaatacaatcacatattcaattgttgaaaacataaaggatgaatctgtcaataaaa |
21989435 |
T |
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| Q |
160 |
tcacaacatccacctcaatagtatacaagagtaaattgtctatcaataatacgatcaaatcaaagttattggaacaccaatgtctccctatatgtaacat |
259 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21989434 |
tcacaacatccat-tcaatagtatacaacagtaaattgtctatcaataatacaatcaaatcaaagttattggaacaccaatgtctccctatatgtaactt |
21989336 |
T |
|
| Q |
260 |
tgatacccaaattannnnnnnnaacaaattgacactcaaattattgatatttaatatgtaaatatgagtcaaacaaacaccgcgacaaaactagagatta |
359 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
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| T |
21989335 |
tgatacccaaattatttttttgaacaaattgacactcaaattattgatatttaatatgtaaatatgggtcaaacaaacaccgcgacaaaactataaatta |
21989236 |
T |
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| Q |
360 |
aat |
362 |
Q |
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||| |
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| T |
21989235 |
aat |
21989233 |
T |
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