View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17245_low_9 (Length: 368)
Name: NF17245_low_9
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 57 - 358
Target Start/End: Complemental strand, 1178760 - 1178459
Alignment:
| Q |
57 |
ttgagcatagtatgagagggtgtatacttactaacagaaagaaagaaataaaaatatcctagtgcggtgagctaggttgacaagggagttatgctctgta |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178760 |
ttgagcatagtatgagagggtgtatacttactaacagaaagaaagaaataaaaatatcctagtgcggtgagctaggttgacaagggagttatgctctgta |
1178661 |
T |
|
| Q |
157 |
aatactcagaaccccataaacatctatagtaaatcgaaacataaatttgaaaatcgcttagcgagttgccttgatcgtcatatgaagccagcagctttcc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
1178660 |
aatactcagaaccccataaacatctatagtaattcaaaacataaatttgaaaatcgctgagcgagttgccttgatcgtcatatgatgccagcaactttcc |
1178561 |
T |
|
| Q |
257 |
aacctttcctccaaagacttgatcgccatccttccagaaatcacttatgcaacatgtccacggaactggcccaatgttgtaaattttggtccacaggttc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1178560 |
aacctttcctccaaagacttgatcgccatccttccagaaatcacttatgcaacatgtccacggaactggcccaatgttgtaaattttggtccaccggttc |
1178461 |
T |
|
| Q |
357 |
tg |
358 |
Q |
| |
|
|| |
|
|
| T |
1178460 |
tg |
1178459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 126 - 337
Target Start/End: Original strand, 6840208 - 6840417
Alignment:
| Q |
126 |
agctaggttgacaagggagttatgctctgtaaatactcagaaccccataaacatctatagtaaatcgaaacataaatttgaaaatcgcttagcgagttgc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| || || || | || ||||| | ||||| || ||| | |
|
|
| T |
6840208 |
agctaggttgacaagggagttatgctctgcaaatactcatgacccaataaacatctatcatacttc--aatagaagtttgagattcgctatgcaggtttc |
6840305 |
T |
|
| Q |
226 |
cttgatcgtcatatgaagccagcagctttccaacctttcctccaaagacttgatcgccatccttccagaaatcacttatgcaacatgtccacggaactgg |
325 |
Q |
| |
|
||||||| ||||| |||| |||||||| |||||||||||||||||| ||| |||||||||||||||| ||| ||| | ||||||| |||||| ||| || |
|
|
| T |
6840306 |
cttgatcttcatacgaagtcagcagctgtccaacctttcctccaaaaactcgatcgccatccttccaaaaaccacgtctgcaacaagtccactcaaccgg |
6840405 |
T |
|
| Q |
326 |
cccaatgttgta |
337 |
Q |
| |
|
||||||||||| |
|
|
| T |
6840406 |
tccaatgttgta |
6840417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University