View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17246_high_1 (Length: 494)
Name: NF17246_high_1
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 1428036 - 1427574
Alignment:
| Q |
1 |
tagttaaaactgacaattttttagtgaatgactaggttaatttccacaattgacagtttaatttccattctttcaataaaaattcttaaaatctgggtta |
100 |
Q |
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| T |
1428036 |
tagttaaaactgacaattttttagtgaatgactgggttaatttccacaattgacagtttaatttccattctttcaataaaaattcttaaaatttgggtta |
1427937 |
T |
|
| Q |
101 |
cacttacttcaccactacaaaactgatgttgaaggtgaggg-tttcctcccacttataaacatattttcagaccagatcatgtggaactgtcaa------ |
193 |
Q |
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| T |
1427936 |
tacttactttaccactacaaaactgatgtttaaagtgaggggtttcctcccacttataaacatattttcagaccagatcatgtggaactgtcaacagtca |
1427837 |
T |
|
| Q |
194 |
acacttcccacccaggactagatatcttgagcttgacccgaatggcctgataccagatcttgaatagactctgataccatctgaaaatttgggttgggta |
293 |
Q |
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| T |
1427836 |
acacttcccacccaggactaggtatcttgagcttgacccaaatggccagataccggatcttgaatagactctgataccatctgaaaatttgggttgggta |
1427737 |
T |
|
| Q |
294 |
ctc--tctacaaaaccggcctaact----caacttacaaagtcatttcagggcatatcacatgggactctcgacaaaaacctagtgactactgtcaatgt |
387 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1427736 |
ctcactctacaaaaccggcctaactaactcaacttacaaagtcatttcagggcatatcacatgggactctcgacaaaaacctagtgactattgtcaatgt |
1427637 |
T |
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| Q |
388 |
ttcacaaagcaacatctttttgagtcaaattgaaataggaagtgatcatgaaaagaatgattc |
450 |
Q |
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| T |
1427636 |
ttcacaaagcaacatctttttgagtcaaattgaaataggaagtgatcatgaaaagaatgattc |
1427574 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 32344726 - 32344771
Alignment:
| Q |
244 |
taccagatcttgaatagactctgataccatctgaaaatttgggttg |
289 |
Q |
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| T |
32344726 |
taccagatcttggatagactcttataccatcttaaaaattgggttg |
32344771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 24001607 - 24001563
Alignment:
| Q |
247 |
cagatcttgaatagactctgataccatctgaaaatttgggttggg |
291 |
Q |
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||||||||| |||||||||||||| |||| | ||||||||||||| |
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| T |
24001607 |
cagatcttggatagactctgatactatcttagaatttgggttggg |
24001563 |
T |
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