View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17246_high_3 (Length: 405)
Name: NF17246_high_3
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 31768708 - 31769101
Alignment:
| Q |
1 |
aaaaactccaaaaccagataaaacacatggttgttgtcgaatgatagcttacaaatagcattattgacttctgtcaaaccccctaatccattatactcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768708 |
aaaaactccaaaaccagataaaacacatggttgttgtcgaatgatagcttacaaatagcattattgacttctgtcaaaccccctaatccattatactcaa |
31768807 |
T |
|
| Q |
101 |
ttataagtggtcactactgtccttctcttcaataccaatcgtgaggtgcactcaattatatatacattctcaaagttcatttgaacagggccagaccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768808 |
ttataagtggtcactactgtccttctcttcaataccaatcgtgaggtgcactcaattatatatacattctcaaagttcatttgaacagggccagaccaaa |
31768907 |
T |
|
| Q |
201 |
gctaatcgaggtcgggctacaacacatggctcnnnnnnntgtatttcggcccatcaccatatatagtggttaagtagttctaacgaaaagaaaatgaaaa |
300 |
Q |
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|| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768908 |
gcccatcgaggtcgggctacaacacatggcccaaaaaaatgtatttcggcccatcatcatatatagtggttaagtagttctaacgaaaagaaaatgaaaa |
31769007 |
T |
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| Q |
301 |
gaaactaaacttggtttagtggt----tccacactctgttcgggttcataaggtcgctaatttgaatcaggttgcttaaataggcgcttgattt |
390 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769008 |
gaaactaaacttggtttagtggttccgtccacactctgttcgggttcataaggtcgctaatttgaatcaggttgcttaaataggcgcttgattt |
31769101 |
T |
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