View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17246_high_6 (Length: 305)
Name: NF17246_high_6
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 47807731 - 47807446
Alignment:
| Q |
1 |
ctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagataatcgtccttcgaaagctaaaacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47807731 |
ctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagataagcgtccttcgaaagctaaaacattt |
47807632 |
T |
|
| Q |
101 |
tttcttcatgtatcatacaacttacaacagttattttcggtaacaagccagtgttcactttttgccgcaaatcctcgcattcttgctgtcagtaaaacaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47807631 |
tttctacatgtatcatacaacttacaacagttattttcggaaacaagccagtattcactttttgccgcaaatcctcgcattcttgctgtcagtaaaacaa |
47807532 |
T |
|
| Q |
201 |
gacaattaatatgtattccaggaaaatatagtttcactgcaaattatttagatgtacctctgtgaaatcatcatcagagagctcag |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47807531 |
gacaattaatatgtattccaggaaaatatagtttcactgcaaattatttagatgtacctctgtgaaatcatcatcagagagctcag |
47807446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 47805063 - 47804879
Alignment:
| Q |
108 |
atgtatcatacaacttacaacagttattttcggtaacaagccagtgttcactttttgccgcaaatcctcgcattcttgctgtcagtaaaacaagacaatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || | ||| ||||| |||||||||| ||| |||||||| || ||||||||| |||||||||| |||||| |
|
|
| T |
47805063 |
atgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaatcctcacaatcttgctgtaagtaaaacaacacaatt |
47804964 |
T |
|
| Q |
208 |
aatatgtattccaggaaaat-atagtttcactgcaaattatttagatgtacctctgtgaaatcatcatcagagagctcagtgatg |
291 |
Q |
| |
|
|||| ||||||||||| ||| ||| ||||||||||||||||||| | |||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
47804963 |
aatacgtattccaggataataatattttcactgcaaattatttacacgtacctctgtgaaatcttcatcggagagctcagagatg |
47804879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University