View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17246_low_10 (Length: 260)
Name: NF17246_low_10
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 11287190 - 11287362
Alignment:
| Q |
11 |
cacagaccattattctctacaaagttcannnnnnnn-aatctagaattattacgaattattgaaagaatgaataaaaaaggactaaaccaatcaaaaaca |
109 |
Q |
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| T |
11287190 |
cacacaccattattctctacaaagttcatttttttttaatctagaattattactaattattgaaagaatgaacaaaaaaggactaaaccaatcaaaaaca |
11287289 |
T |
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| Q |
110 |
aaacaccccacaagttatttccttcaaagttctttcttttatctataaatgttacaaaatattcaaagggttg |
182 |
Q |
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| T |
11287290 |
aaacaccccacaagttatttccttcaaagttctttcttttatctataaatgttacaaaatattcaaagggttg |
11287362 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 11287380 - 11287420
Alignment:
| Q |
220 |
cccacaagttattttcattcaaagttactttctttcataat |
260 |
Q |
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| T |
11287380 |
cccacaagttattttcattcaaagttactttctttcataat |
11287420 |
T |
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