View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17246_low_12 (Length: 251)
Name: NF17246_low_12
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 47807714 - 47807953
Alignment:
| Q |
1 |
tactacttattcttgtagcagtttgacagtaaaaccgtgtcattgttttaagttgtcattcggcgactatcgtgacattttgaattgnnnnnnnnnnnnn |
100 |
Q |
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| T |
47807714 |
tactacttattcttgtagcagtttgacagtaaaaccgtgtcattgttttaagttgtcattcggcgactatcgtgacacgttgaattgtttttattttatt |
47807813 |
T |
|
| Q |
101 |
nnnacttaaatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807814 |
tttacttaaatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatat |
47807913 |
T |
|
| Q |
201 |
aacaaaacatgtattcattcttggctctttacttgttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
47807914 |
aacaaaacatgtattcattcttggctctttacttgttcat |
47807953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 47805085 - 47805204
Alignment:
| Q |
108 |
aaatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaa |
207 |
Q |
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| T |
47805085 |
aaatatatagcggatgattttaacttcttt-tttccctgctggcattggaaggaggatcttcaagagaaggctacaagtcttcacgaggatataacgaaa |
47805183 |
T |
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| Q |
208 |
catgtattcattcttggctct |
228 |
Q |
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|||||||||||||||| |||| |
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| T |
47805184 |
catgtattcattcttgactct |
47805204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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