View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17246_low_14 (Length: 248)
Name: NF17246_low_14
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 1428205 - 1428323
Alignment:
| Q |
116 |
aaggcaccaagcctgtacttttcttttaatatttcagatatcaagaactaatgaaagaaagttcacggatgccattgtttgatttaagaaagttgaatgc |
215 |
Q |
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| T |
1428205 |
aaggcaccgagcctgtacttttcttttaatatttcagatatcaagaactaatgaaagaaagttcacggatgccattgtttgatttaagaaagttgaatgc |
1428304 |
T |
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| Q |
216 |
ttcacttccagttcctttg |
234 |
Q |
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| T |
1428305 |
ttccctaccagttcctttg |
1428323 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 1428119 - 1428157
Alignment:
| Q |
29 |
tcatggattggtggttgacaataatatgaccatgatatg |
67 |
Q |
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| T |
1428119 |
tcatggattggtggttgacaataatatgaccatgatatg |
1428157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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