View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17246_low_15 (Length: 239)

Name: NF17246_low_15
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17246_low_15
NF17246_low_15
[»] chr2 (2 HSPs)
chr2 (1-222)||(30722121-30722341)
chr2 (55-200)||(30709300-30709445)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30722121 - 30722341
Alignment:
Q  1 ataagactattttagtaaatgactcagattttatcattaagaattcttttgcatctttgtgagcatctgtgaaagtatttgcatctaccacagcaaatcg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  30722121 ataagactattttagtaaatcactcagattttatcattaagaattcttttgcatctttgtgagta-ctgtgaaagtatttgcatctaccacagcaaatcg 30722219  T
Q  101 atttgttaaggcagatggaatttgggaggacttgtgcaattatttggcgtgtcatcgatgtgctaaaacaatttcctacacagcaagtcactcaagtgaa 200  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30722220 atttcttaaggcagttggaatttgggaggacttgtgcaattatttggcgtgtcatcgatgtgctaaaacaatttcctacacagcaagtcactcaagtgaa 30722319  T
Q  201 gtcgacagccaatggactcaat 222  Q
     |||||||||||||||||||||    
T  30722320 ctcgacagccaatggactcaat 30722341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 30709300 - 30709445
Alignment:
Q  55 ctttgtgagcatctgtgaaagtatttgcatctaccacagcaaatcgatttgttaaggcagatggaatttgggaggacttgtgcaattatttggcgtgtca 154  Q
    |||| |||| || |||||||| ||||||||||||||||| |||| |||||||||  |||| ||||||||| |||||||| ||||||||||| ||| ||||    
T  30709300 ctttatgagtatgtgtgaaagcatttgcatctaccacaggaaatggatttgttagtgcagttggaatttgagaggacttctgcaattatttcgcgagtca 30709399  T
Q  155 tcgatgtgctaaaacaatttcctacacagcaagtcactcaagtgaa 200  Q
      ||||| |||||||||||||| ||||||||| | |||||||||||    
T  30709400 atgatgtcctaaaacaatttcccacacagcaaattactcaagtgaa 30709445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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