View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17246_low_16 (Length: 237)
Name: NF17246_low_16
Description: NF17246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17246_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 11287515 - 11287621
Alignment:
| Q |
115 |
ttaccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggc |
214 |
Q |
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| T |
11287515 |
ttaccttcggttttgaaaccaaactttgatctgtttaggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggc |
11287614 |
T |
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| Q |
215 |
ttaggac |
221 |
Q |
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||||||| |
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| T |
11287615 |
ttaggac |
11287621 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 43511312 - 43511391
Alignment:
| Q |
116 |
taccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttg |
195 |
Q |
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| T |
43511312 |
taccttctattttggaaccaaactttgatctgtttaggttcaatatgagagagaataggacactctcgaataagctgttg |
43511391 |
T |
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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 4336282 - 4336197
Alignment:
| Q |
115 |
ttaccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttc |
200 |
Q |
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| T |
4336282 |
ttaccttctattctgaaaccaaactttgatttgtcttggttcaatattagaaagaataggacattctctaataagttgttgtcttc |
4336197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 21743602 - 21743707
Alignment:
| Q |
116 |
taccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggct |
215 |
Q |
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| T |
21743602 |
taccttcgattttggaaccaaaccttgatctgtttgggttcaatgttggaaagaataggacactcacgaatcaattgttgtcttctcatggaactaggct |
21743701 |
T |
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| Q |
216 |
taggac |
221 |
Q |
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|||||| |
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| T |
21743702 |
taggac |
21743707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 51354490 - 51354406
Alignment:
| Q |
116 |
taccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttc |
200 |
Q |
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||||||| ||| || |||||||||||||||||||| |||||||| | ||| || |||||||| |||||||||||||||||||||| |
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| T |
51354490 |
taccttctgttctggaaccaaactttgatctgtttaggttcaatatgagagagaataggacactctctaatgagttgttgtcttc |
51354406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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