View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17247_high_3 (Length: 396)
Name: NF17247_high_3
Description: NF17247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17247_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 53 - 380
Target Start/End: Original strand, 14753660 - 14753978
Alignment:
| Q |
53 |
ttgcatatataaaagatttctttcttctcatgtggggttggttcatgagtttaaacggaactaataatcctacgtttaaatggacctacaatacgtaaat |
152 |
Q |
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| T |
14753660 |
ttgcatatataaaagatttctttcttctcatgtgg--ttggttcatgaatttaaacggaactaataatcctacgtttaaatggacctacaatacgtcaat |
14753757 |
T |
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| Q |
153 |
actatatatccatgctctatattttttggataaatatccaactcaaaatttgactcattaaattatacatatttcgatttcgtgagctcaattaacacgt |
252 |
Q |
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| T |
14753758 |
actatatatcca-gctctatattttttggataaatatccaactcaaaatttgactcattaaattatacatatttcgatttcgtgagctcaattaacacgt |
14753856 |
T |
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| Q |
253 |
ctctaagatttagatgcaatgatgtgagaggtttgataataaataatttcaataaataaaggtgcttgtttacatcttctataaatcaaaatcaaaacag |
352 |
Q |
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| T |
14753857 |
ctctaagatttagatgcaatgatgtgagaggcttgataataaataatttcaataaataaaggtgcttgtttacattttctgt------aaatcaaaacaa |
14753950 |
T |
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| Q |
353 |
ataaaaagaaaagctagtcctcgtcttt |
380 |
Q |
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| T |
14753951 |
ataaaaagaaaagctagtcctcgtcttt |
14753978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 14749055 - 14749099
Alignment:
| Q |
10 |
acatcatcaaaccaattgaagtgggttgcatgact-ttagataat |
53 |
Q |
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| T |
14749055 |
acatcatcaaaccaattcaagtgggttgcattactcttagataat |
14749099 |
T |
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