View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17247_high_4 (Length: 389)
Name: NF17247_high_4
Description: NF17247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17247_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 6095900 - 6096253
Alignment:
| Q |
10 |
aagaaaatggtacgagggaagtatctagctttgaagatttttgcaacaagagaagtggtgtcttggatgatacgccaacattgtttgccaagcaacgctt |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6095900 |
aagaaagtggtacgagggaagtatctagctttgaagatttttgcaacaagagaagtggtgtcttggatgatacgccaacattgtttgccaagcaactctt |
6095999 |
T |
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| Q |
110 |
tgttgaaagctgaaatagatcggaaccccagccctcctttaccttttgaaatacccatcctcttctaactcatccaatggattttcctagcggtttcgtc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6096000 |
tgttgaaagctgaaatagatcggaaccccagccctcctttaccttttgaaatacccatcctcttcaaactcatccaatggattttcctagcggtttcgtc |
6096099 |
T |
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| Q |
210 |
agaaccccaccagaactttgaaagcattccttcaatatcattacaacagccctctggtattttgtagcagctcattatgtaatttgggatgacttgcgct |
309 |
Q |
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| T |
6096100 |
agaaccccaccagaactttgagagcattccttcaatatcattacaacagccctctagtattttgtagcagctcattatgtaatttgggatggcttgcgct |
6096199 |
T |
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| Q |
310 |
actgacttgataagggtctccttccccgctcgggacaagaacttttctttccaa |
363 |
Q |
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| T |
6096200 |
actgacttgataagggtctccttccctgctcgggacaagagcttttctttccaa |
6096253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 32805017 - 32804669
Alignment:
| Q |
10 |
aagaaaatggtacgagggaagtatctagctttgaagatttttgcaacaagagaagtggtgtcttggatgatacgccaacattgtttgccaagcaacgctt |
109 |
Q |
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| T |
32805017 |
aagaaagtggtacgagggaagtatctagctttgaagatttttgcaacaagagaagtggtgtcttggatgatacgccaacattgtttgccaagcaacgctt |
32804918 |
T |
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| Q |
110 |
tgttgaaagctgaaatagatcggaaccccagccctcctttaccttttgaaatacccatcctcttctaactcatccaatggattttcctagcggtttcgtc |
209 |
Q |
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| T |
32804917 |
tattgaaagctgaaatagatcggaaccccagccctcctttaccttttgaaatacccatcctcttccaactcatccaatggattttcctagcggtttcgtc |
32804818 |
T |
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| Q |
210 |
agaaccccaccagaactttgaaagcattccttcaatatcattacaacagccctctggtattttgtagcagctcattatgtaatttgggatgacttgcgct |
309 |
Q |
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| T |
32804817 |
agaaccccgccagaactttgaaagcattccttcaatatcattacaacagccctctggtattttgtagcagctcattatgtaatttgggatggcttgcgct |
32804718 |
T |
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| Q |
310 |
actgacttgataagggtctccttccccgctcgggacaagaacttttctt |
358 |
Q |
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| T |
32804717 |
actgacttgataagagtctccttccctgctcgggacaagaacttttctt |
32804669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 13464289 - 13464217
Alignment:
| Q |
268 |
attttgtagcagctcattatgtaatttgggatgacttgcgctactgacttgataagggtctccttccccgctc |
340 |
Q |
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|||||||| ||||||| ||||||||||| ||| |||| ||||||| |||||||| ||||||||||| |||| |
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| T |
13464289 |
attttgtaacagctcagaatgtaatttggaatggcttgtgctactgctttgataagtgtctccttccctgctc |
13464217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 13523760 - 13523839
Alignment:
| Q |
214 |
ccccaccagaactttgaaagcattccttcaatatcattacaacagccctctggtattttgtagcagctcattatgtaatt |
293 |
Q |
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|||||||| ||||| | ||||||||||||||| ||| |||||| || || |||| |||||||||||||| |||||||| |
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| T |
13523760 |
ccccaccaaaacttagcaagcattccttcaatggcatgacaacatccttccggtaacttgtagcagctcatgatgtaatt |
13523839 |
T |
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