View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17247_low_4 (Length: 427)
Name: NF17247_low_4
Description: NF17247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17247_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 15528789 - 15528983
Alignment:
| Q |
1 |
tagttctgccacttttttcctttgttttctagatgaagcagttgtccgtttcttaccttgagtaaatttataagggtcaaattacataaaataagtatat |
100 |
Q |
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| T |
15528789 |
tagttctgccacttttttcctttgttttctagatgaagcagttgtccgtttcttaccttgagtaaatttataagggtcaaattacataaaataagtatat |
15528888 |
T |
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| Q |
101 |
tttaaagaatttttagtaagggtgtcaatgtacagaatgacatttgtctaatttctattctatggttttagttgaccaaaataaaggaagatcag |
195 |
Q |
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| T |
15528889 |
tttaaagaatttttagtaagggtgtcaatgtacagaatgacatttgtctaatttctattctatggttttagttgaccaaaataaaggaagatcag |
15528983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 15529103 - 15529253
Alignment:
| Q |
267 |
ctggtccagttcaattttgtcgaaaagctcaacgaaattcttcagatttagggagctattggtttggaaattgactacggaattccttgtatgaaagtaa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15529103 |
ctggtccagttcaattttgtcgaaaagctcaacgaaattcttcagatttagggagctattggtttggaaattgactacggaattccttgtatgaaagtaa |
15529202 |
T |
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| Q |
367 |
gtatttctctacatgtctgctatattctatgattttcacactttacctttg |
417 |
Q |
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| T |
15529203 |
gtatttctctacatgtctgctatattctatgattttcacactttacctttg |
15529253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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