View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17247_low_7 (Length: 389)
Name: NF17247_low_7
Description: NF17247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17247_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 241 - 369
Target Start/End: Complemental strand, 29166007 - 29165879
Alignment:
| Q |
241 |
attaccctgtataccatatt-acatgatactgtacaaccatagctaccataattacattatttttaacaagctccatcactttagagcatataaatcata |
339 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29166007 |
attaccctatatactatatttacatgatgctgtacaaccatagctaccataattacattatttttaacaagctc-atcactttagagcatataaatcata |
29165909 |
T |
|
| Q |
340 |
tgcatcaatcttgttacttgtattgcttat |
369 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
29165908 |
tgcatcaagcttgttacttgtattgcttat |
29165879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 29167846 - 29167725
Alignment:
| Q |
86 |
ttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcatctcaatataaccggaacaagcgtattcagcatttgcctgataac |
185 |
Q |
| |
|
|||||||||| ||| | |||||| |||||||||| || |||||||||||| |||||||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
29167846 |
ttttcatattcattct-tcttgcttttcattcattaagtgcttgcatatatagcatctcaatataaccggaaccagggtattcaacatttgcctgataac |
29167748 |
T |
|
| Q |
186 |
aatgctaaatgaattgtaaaaca |
208 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
29167747 |
aatgctaaaggaattgtaaaaca |
29167725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 29169803 - 29169661
Alignment:
| Q |
42 |
tgcaaaggaaagaaatagtaacatgctaagggaaccctaagcccttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcat |
141 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||| |||||||||| || ||||||| |||| || || |
|
|
| T |
29169803 |
tgcaaaggaaagaaatagtaacttggtaagggaaaactaagcc-ttttcatattgattttgtcttgcttttcattcatcaagtgcttgcgtatatagtat |
29169705 |
T |
|
| Q |
142 |
ctcaatataaccggaacaagcgtattcagcatttgcctgataacaatgctaaa |
194 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29169704 |
ctcaatat---------aagcgtattcagcatttgcctgataacaatgctaaa |
29169661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 18071950 - 18071982
Alignment:
| Q |
324 |
gagcatataaatcatatgcatcaatcttgttac |
356 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
18071950 |
gagcatataaatcatatgcatcaagcttgttac |
18071982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University