View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17247_low_9 (Length: 256)

Name: NF17247_low_9
Description: NF17247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17247_low_9
NF17247_low_9
[»] chr8 (3 HSPs)
chr8 (61-241)||(3403684-3403864)
chr8 (1-34)||(3403893-3403926)
chr8 (153-206)||(32967699-32967752)
[»] chr2 (2 HSPs)
chr2 (132-180)||(40213690-40213738)
chr2 (153-217)||(13530612-13530676)
[»] chr1 (1 HSPs)
chr1 (132-204)||(17892937-17893009)
[»] chr4 (2 HSPs)
chr4 (154-204)||(25313519-25313569)
chr4 (153-205)||(29927303-29927355)
[»] scaffold0009 (1 HSPs)
scaffold0009 (64-101)||(203604-203641)
[»] chr5 (1 HSPs)
chr5 (153-205)||(39351093-39351145)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 3403864 - 3403684
Alignment:
Q  61 aaatattaacaagtgtctttacgacattgtttaagcaactatagtaagtaaattttgtctgaaaaatgatataattattattttgagactactttgactt 160  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3403864 aaatattaacaactgtctttacgacattgtttaagcaactatagtaaataaattttgtctgaaaaatgatataattattattttgagactactttgactt 3403765  T
Q  161 gtaattacaagataaaatttatttttgtgaattccttaaacaatgtgctaaagacacataacccatttgaggttggccttg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3403764 gtaattacaagataaaatttatttttgtgaattccttaaacaatgtgctaaagacacataacccatttgaggttggccttg 3403684  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3403926 - 3403893
Alignment:
Q  1 cactgttaaaatatttctcttctttgtaattgac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3403926 cactgttaaaatatttctcttctttgtaattgac 3403893  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 32967752 - 32967699
Alignment:
Q  153 tttgacttgtaattacaagataaaatttatttttgtgaattccttaaacaatgt 206  Q
    ||||||||||| ||  |||||||||||| | ||| |||||||||||||||||||    
T  32967752 tttgacttgtattttgaagataaaatttctctttatgaattccttaaacaatgt 32967699  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 40213738 - 40213690
Alignment:
Q  132 taattattattttgagactactttgacttgtaattacaagataaaattt 180  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||    
T  40213738 taattattattttgagattactttgacttgtattttcaagataaaattt 40213690  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 13530612 - 13530676
Alignment:
Q  153 tttgacttgtaattacaagataaaatttatttttgtgaattccttaaacaatgtgctaaagacac 217  Q
    ||||||||||| || ||||| ||| ||| |||||||| ||||||| |||||||| || |||||||    
T  13530612 tttgacttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacac 13530676  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 17892937 - 17893009
Alignment:
Q  132 taattattattttgagactactttgacttgtaattacaagataaaatttatttttgtgaattccttaaacaat 204  Q
    ||||||||| ||| ||| ||||||||||| || || ||||||||||||||| |||||| ||| ||||||||||    
T  17892937 taattattactttaagattactttgacttatattttcaagataaaatttatatttgtgtattgcttaaacaat 17893009  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 25313519 - 25313569
Alignment:
Q  154 ttgacttgtaattacaagataaaatttatttttgtgaattccttaaacaat 204  Q
    |||||||||| ||  |||||||||||||||||||||||||  |||||||||    
T  25313519 ttgacttgtatttttaagataaaatttatttttgtgaattgtttaaacaat 25313569  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 29927355 - 29927303
Alignment:
Q  153 tttgacttgtaattacaagataaaatttatttttgtgaattccttaaacaatg 205  Q
    ||||||||||| || ||||| ||| ||| |||||||| |||||||||||||||    
T  29927355 tttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatg 29927303  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 203604 - 203641
Alignment:
Q  64 tattaacaagtgtctttacgacattgtttaagcaacta 101  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  203604 tattaacaagtgtctttatgacattatttaagcaacta 203641  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 39351093 - 39351145
Alignment:
Q  153 tttgacttgtaattacaagataaaatttatttttgtgaattccttaaacaatg 205  Q
    ||||||||||| || || |||||||||||||||| ||| ||| ||||||||||    
T  39351093 tttgacttgtattttcatgataaaatttatttttctgagttctttaaacaatg 39351145  T

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