View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_12 (Length: 397)
Name: NF17248_high_12
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 25016300 - 25015935
Alignment:
| Q |
17 |
agtttgcatatcaaccttttatatactaaatctacttgatctttgagaactcctaatcttctcttattctcaaatctcaatacattgtttacttcttttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25016300 |
agtttgcatatcaaccttttatatactaaatctacttgatctttgagaattcctaatcttctcttattctcaaatctcaatacattgtttacttcttttt |
25016201 |
T |
|
| Q |
117 |
cttcctaatcaaatcaaatttctaataaactatagttttcaaattttaatattaaaattttaggtatggacgagctcaatgatccaacactatcacttga |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25016200 |
cttcctaatcaaatcaaatttctaacaaactatagttttcaaattttaatattaaaattttaggtatggacgagctcaatgatccaacactatcacttga |
25016101 |
T |
|
| Q |
217 |
agaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagtaaatagcaccatctctctacttattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25016100 |
agaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttcatctgcaatcaagtaaatagcaccatctctctacttattt |
25016001 |
T |
|
| Q |
317 |
gatattgaatcacattattttcacactctaaccttagtttccnnnnnnnaatctctgatatattat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25016000 |
gatattgaatcacattattttcacactctaaccttagtttcctttttttaatctctgatatattat |
25015935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 108 - 352
Target Start/End: Complemental strand, 25037491 - 25037249
Alignment:
| Q |
108 |
cttctttttcttcctaatcaaatcaaatttctaataaactatagttttcaaattttaatattaaaattttaggtatggacgagctcaatgatccaacact |
207 |
Q |
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| T |
25037491 |
cttctttttcttcttagtcaaatcaattgtataataaactataattttaaaattttaataattaaattt-aggtatggacgagttaaatgatccaacgct |
25037393 |
T |
|
| Q |
208 |
atcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagtaaatagcaccatctctc |
307 |
Q |
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|||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| | |||||||| |
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| T |
25037392 |
atcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttcatctgcaatcaagtaaatag-aacatctctc |
25037294 |
T |
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| Q |
308 |
tacttatttgatattgaatcacattattttcacactctaacctta |
352 |
Q |
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| ||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
25037293 |
ttcttatttcatattgaatcacattattttcacactttatcctta |
25037249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 4623408 - 4623315
Alignment:
| Q |
192 |
tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaat |
285 |
Q |
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||||||||||||| |||||||| ||||| || || ||||||||| |||||||||||||||||||||| ||||| ||| || ||| ||||||||| |
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| T |
4623408 |
tcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat |
4623315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 25044977 - 25044877
Alignment:
| Q |
192 |
tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagta |
291 |
Q |
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|||||||||||||||| || ||||||||| | || || |||||| ||||||||||||||||||||| ||||||||| || || | ||||||||||||| |
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| T |
25044977 |
tcaatgatccaacactgtcgcttgaagaatcccttatagatactctcagaattgattacttttatcgtcatctttattatcttcaaactgcaatcaagta |
25044878 |
T |
|
| Q |
292 |
a |
292 |
Q |
| |
|
| |
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|
| T |
25044877 |
a |
25044877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 25002232 - 25002308
Alignment:
| Q |
192 |
tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttat |
268 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | || | |||||| |||||||||||||||||||||| ||||||||| |
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| T |
25002232 |
tcaacgatccaacattatcacttgaagaatcccttttagatactgacagaattgattacttttatcgtcatctttat |
25002308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 24984781 - 24984681
Alignment:
| Q |
192 |
tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagta |
291 |
Q |
| |
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|||| ||||| | ||| |||||||||||| | || | |||||||| ||||| |||||||||||||| ||||||||| ||||| | ||||||||| ||| |
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| T |
24984781 |
tcaacgatcctaaactgtcacttgaagaatcccttttagatacttatagaatcgattacttttatcgtcatctttattatgttcaagctgcaatcaggta |
24984682 |
T |
|
| Q |
292 |
a |
292 |
Q |
| |
|
| |
|
|
| T |
24984681 |
a |
24984681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 18805598 - 18805690
Alignment:
| Q |
195 |
atgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatca |
287 |
Q |
| |
|
|||||||||| |||||||| ||||| |||| ||||||| ||| |||||||||||| |||||| ||||||||| | ||| |||||||||||| |
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| T |
18805598 |
atgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattaccattatcgtcatctttattacgttgcatctgcaatca |
18805690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 42165143 - 42165025
Alignment:
| Q |
174 |
ttttaggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgt |
273 |
Q |
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|
|||||||||| || ||| |||||||||||||| ||||||| || ||||| || ||||| ||||| |||||||| || | | |||| ||||| | | || | |
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| T |
42165143 |
ttttaggtattgatgagttcaatgatccaacattatcactagaggaagctcttatggacacttatagaattgactattatcatcgtcatctcttttatat |
42165044 |
T |
|
| Q |
274 |
ttcatctgcaatcaagtaa |
292 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
42165043 |
tcgatctgcaatcaagtaa |
42165025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 29408159 - 29408273
Alignment:
| Q |
177 |
taggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttc |
276 |
Q |
| |
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||||||| || |||||||||||||||||||| |||||||||||||| || ||||| ||| ||||||||||||||| ||||| ||| || || |
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| T |
29408159 |
taggtatagatgagctcaatgatccaacactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaa |
29408258 |
T |
|
| Q |
277 |
atctgcaatcaagta |
291 |
Q |
| |
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||||||||||||||| |
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| T |
29408259 |
atctgcaatcaagta |
29408273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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