View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_17 (Length: 355)
Name: NF17248_high_17
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 39758038 - 39757756
Alignment:
| Q |
19 |
ccacaaactatttccataagcactcccaaataatagtctcacaagtgtgccgtttaagcggttacataaactcaaataagtcaatccacgcatacgaatt |
118 |
Q |
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| T |
39758038 |
ccacaaactatttccataagcactcccaaataatagtctcacaagtgtgccgtttaagcggttacataaactcaaataagtcaatccacgcataagaatt |
39757939 |
T |
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| Q |
119 |
cagagattgaacacataaacagaatgctatgaaacaaacaagagaatggtgaaactgaacaaaccttagccacagcagcttgccttgatcttactgacct |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39757938 |
cagagattgaacacataaacagaatgatatgaaacaaacaagagaatggtgaaactgaacaaaccttagccacagcagcttgccttgatcttactgacct |
39757839 |
T |
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| Q |
219 |
agacttatgtgaaaaagaatcagcatagcgtggaatcccatcatagaaatcatcattcctagttcctgcagcaacactaacag |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39757838 |
agacttatgtgaaaaagaatcagcatagcgtggaatcccatcatagaaatcatcattcctagttcctgcagaaacactaacag |
39757756 |
T |
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