View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_18 (Length: 343)
Name: NF17248_high_18
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 27 - 327
Target Start/End: Complemental strand, 11327761 - 11327461
Alignment:
| Q |
27 |
aacatttatgaaaatatgttatcggtttttactagtttagtagtactgttaattttttatattagacgcttggaactttctctcccacgtttttcaccaa |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11327761 |
aacatttatgaaaatatgttatcggtttttactagtttagtagtactgttaattttttatattagacgcttggaactttctctcccacgtttttcaccaa |
11327662 |
T |
|
| Q |
127 |
agaaaatcgatcaactttttctctcacgtgttccaatggaagtttctttatctttcattgtgaattttctgcatcatgatcatcatgtagacctcatctt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
11327661 |
agaaaatcgatcaactttttctctcacgtgttccaatggaagtttctttatctttcactgtgaattttctacatcaagatcatcatgtagacctcatctt |
11327562 |
T |
|
| Q |
227 |
aggcttcattcatcgcagttatgccaagtttcccgcattcatcactatgatcgaaaccctacgtttttctttgttaattgatgtaatgttcacctcttat |
326 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11327561 |
aggcttcattcattgcagttatgccaagtttcccgcattcatcactatgatcgaaaccctacgtttttctttgttaattgatgtaatgttcacctcttat |
11327462 |
T |
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| Q |
327 |
a |
327 |
Q |
| |
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| |
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| T |
11327461 |
a |
11327461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 27 - 327
Target Start/End: Complemental strand, 11485782 - 11485482
Alignment:
| Q |
27 |
aacatttatgaaaatatgttatcggtttttactagtttagtagtactgttaattttttatattagacgcttggaactttctctcccacgtttttcaccaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11485782 |
aacatttatgaaaatatgttatcggtttttactagtttagtagtactgttaattttttatattagacgcttggaactttctctcccacgtttttcaccaa |
11485683 |
T |
|
| Q |
127 |
agaaaatcgatcaactttttctctcacgtgttccaatggaagtttctttatctttcattgtgaattttctgcatcatgatcatcatgtagacctcatctt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
11485682 |
agaaaatcgatcaactttttctctcacgtgttccaatggaagtttctttatctttcactgtgaattttctacatcaagatcatcatgtagacctcatctt |
11485583 |
T |
|
| Q |
227 |
aggcttcattcatcgcagttatgccaagtttcccgcattcatcactatgatcgaaaccctacgtttttctttgttaattgatgtaatgttcacctcttat |
326 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11485582 |
aggcttcattcattgcagttatgccaagtttcccgcattcatcactatgatcgaaaccctacgtttttctttgttaattgatgtaatgttcacctcttat |
11485483 |
T |
|
| Q |
327 |
a |
327 |
Q |
| |
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| |
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|
| T |
11485482 |
a |
11485482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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