View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17248_high_2 (Length: 689)

Name: NF17248_high_2
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17248_high_2
NF17248_high_2
[»] chr5 (1 HSPs)
chr5 (16-672)||(6684154-6684814)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 16 - 672
Target Start/End: Complemental strand, 6684814 - 6684154
Alignment:
Q  16 aatactcgtggtctttttgatagaatatataaaccaaataaacaataaaaagggaaaaagaaaaggacatttctttacgtttgtctttgcagtttctaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  6684814 aatactcgtggtctttttgatagaatatataaaccaaataaacaataaaaagggaaaaaggaaaggacatttctttacgtttgtctttgcagtttccaca 6684715  T
Q  116 acataaactaaatcagccaatccccatcgcagaagtatcctactatccttatctctaacatcacatattaggagttttcattttat----ttatttatta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  6684714 acataaactaaatcagccaatccccatcgcagaagtatcctactatccttatctctaacatcacatattaggagttttcattttatatacttatttatta 6684615  T
Q  212 ttacttgtgagagataagacaacccttgcgagttccacattaagtagataagaaatatttaaatgaagctaacattgggtttagcacaaaatattagact 311  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  6684614 ttacttgtgagagattagacaacccttgtgagttccacattaagtagataataaatatttaaatgaagctaacgttgggtttagcagaaaatattagact 6684515  T
Q  312 tctata--atgtgataaattaaaatttgaatttcagttagaagagatgtttaccattagtgcagcagatacatctcaagtaaagttaattacctccaatg 409  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  6684514 tctataatatgtgataaattaaaatttgaatttcagttagaagagatgtttaccattagt---gcagatacatctcaagtaaagttaattacctccaatg 6684418  T
Q  410 nnnnnnnnnnnnnnnnttatatagattttatc-nnnnnnnatatataacgaagaaggtctaagctgataggttttatcttttcattgaaagagagaaaaa 508  Q
                    ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6684417 aaaaacaaagaaaaaattatatagattttatcttttttttatatataacgaagaaggtctaagctgataggttttatctttccattgaaaaagagaaaaa 6684318  T
Q  509 caatattaaagagagaacaaaatagatacnnnnnnntaaattaattgctcgaattgaggtgtttcttcaacaaactttctcacttcacgatctctaatat 608  Q
     ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6684317 taatattaaagagagaacaaaatagattaaaaaaagtaaattaattgctcgaattgaggtgtttcttcaacaaactttctcgcttcacgatctctaatat 6684218  T
Q  609 taatcgtgaaactattcaaattgttcattattttaccaagtttggtttgaactcctttagctaa 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6684217 taatcgtgaaactattcaaattgttcattattttaccaagtttggtttgaactcctttagctaa 6684154  T

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