View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_22 (Length: 322)
Name: NF17248_high_22
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 2058127 - 2058425
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatatttttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2058127 |
taaatggattgatataacacctgtacctggagctctcctagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatatttttcct |
2058226 |
T |
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| Q |
101 |
taaactattagtaatgtactatatttacatacgaaaaagatagatcatatattgagaagtgtgtacctgagttttagaagtagagtatatttctttgccg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2058227 |
taaactattagtaatgtactatatttacataccaaaaagatagatcatatatcgagaagtgtgtacctgagttttagaagtagagtatatttctttgccg |
2058326 |
T |
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| Q |
201 |
tctaggttttcaactttggcttaccgtctagcgagtaacctttcaaataatcaaactgccgaagcaaagacctctcattggacatagtagattgaccaa |
299 |
Q |
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| T |
2058327 |
tctaggttttcaactttggcttaccgtctagcgagtaacctttcaaataatcaaactgccgaagcaaagacctctcatcggacatagtagattgaccaa |
2058425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2029603 - 2029696
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatatt |
94 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| |
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| T |
2029603 |
taaatggattgatataacacctgtacctggagctctcgtagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtttatatt |
2029696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2050894 - 2050986
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatat |
93 |
Q |
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| T |
2050894 |
taaatggattgatataacacctgtatctggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatat |
2050986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2055303 - 2055397
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatattt |
95 |
Q |
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||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
2055303 |
taaatggattgatataacacctgtatctggagctctaatagttaatgttggtgatcttttgcaggcaagttttatgcatacttatgtgtatattt |
2055397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 2034163 - 2034277
Alignment:
| Q |
2 |
aaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatatttttcctt |
101 |
Q |
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||||||||||||||||||||||||||||||||| || | ||| |||| ||||||||||| ||||||||||||||| |||||||||| |||| ||||| | |
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| T |
2034163 |
aaatggattgatataacacctgtacctggagctctcattgttgatgtcggtgatcttctgcaggcaagttttatgtattcttatgtttata--tttccat |
2034260 |
T |
|
| Q |
102 |
aaactattagtaatgta |
118 |
Q |
| |
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||||| ||||||||||| |
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| T |
2034261 |
aaactgttagtaatgta |
2034277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10768627 - 10768744
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatatttttcct |
100 |
Q |
| |
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||||||||||||||| |||||||| ||||| ||| || ||||||||||||| |||||| | |||||||||||| |||||||||||||| ||| ||||| |
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| T |
10768627 |
taaatggattgatattacacctgttcctggggctctcatagttaatgttggagatcttttgcaggcaagttttctgcattcttatgtgcata--tttcca |
10768724 |
T |
|
| Q |
101 |
taaactattagtaatgtact |
120 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
10768725 |
taaactcttagtaatgtact |
10768744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1948552 - 1948466
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgt |
87 |
Q |
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||||||||||||||||||||||| | |||||||| || |||||||| ||||||||||| | ||||||||||||||| |||||||||| |
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| T |
1948552 |
taaatggattgatataacacctgcaactggagctctcatagttaatattggtgatcttttgcaggcaagttttatgtattcttatgt |
1948466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2037726 - 2037798
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagtttt |
73 |
Q |
| |
|
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| T |
2037726 |
taaatggattgatataacacctgtatctggagctctcatagttaatattggtgatcttctgcaggcaagtttt |
2037798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 2055431 - 2055538
Alignment:
| Q |
191 |
ttctttgccgtctaggttttcaactttggcttaccgtctagcgagtaacctttcaaataatcaaactgccgaagcaaagacctctcattggacatagtag |
290 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||| |||| |||||||| || |||||||||||||||| |||| |||| |||||| ||||||| ||| |
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| T |
2055431 |
ttctttgccgtctaggttttcaaccttgacttaccatctaatgagtaaccatt-aaataatcaaactgcccgagcagagacttctcatcggacatattag |
2055529 |
T |
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| Q |
291 |
attgaccaa |
299 |
Q |
| |
|
||||||||| |
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| T |
2055530 |
attgaccaa |
2055538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2046965 - 2047037
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagtttt |
73 |
Q |
| |
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|||||||||||||||| |||||||||||||| || || |||||||||||||||||||||| |||| ||||||| |
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| T |
2046965 |
taaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatcttctgcaggtaagtttt |
2047037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17183375 - 17183300
Alignment:
| Q |
1 |
taaatggattgatataacacctgtacctggagctgtcgtagttaatgttggtgatcttcttcaggcaagttttatg |
76 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| || ||||||||||||| |||||| | ||||||||||||||| |
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| T |
17183375 |
taaatggattaatataacacctgtaactggagctctcatagttaatgttggcgatcttttgcaggcaagttttatg |
17183300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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