View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17248_high_29 (Length: 259)
Name: NF17248_high_29
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 22198707 - 22198923
Alignment:
| Q |
1 |
aaataatggttttgtctttaaaa-ataagctaataatgaaatgtttaaactttaaatgcagggaagtgaggagtgggtatactttgatggatgttgaatg |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22198707 |
aaataatggttttgtctttaaaaaataagctaataatgaaatgtttaaactttaaatgcagggaagtgaggagtgggtatactttgatggatgttgaatg |
22198806 |
T |
|
| Q |
100 |
aagtgagtgttgaaagagatagttctgctgtcagataaaataaatccaagcgcgtcactcataaacgcttaactattagtaatcaaggaattattaatga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22198807 |
aagtgagtgttgaaagagatagttctgctgtcagataaaataaatccaagcacgtcactcataaacgcttaactattagtaatcaaggaattactaatga |
22198906 |
T |
|
| Q |
200 |
ggagaaaaagattatgc |
216 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22198907 |
ggagaaaaagattatgc |
22198923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University