View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_30 (Length: 256)
Name: NF17248_high_30
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_30 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 32378391 - 32378629
Alignment:
| Q |
18 |
caaacatgcgttagtatatatcttaccgctaagacaaacacttagtgatttagacggaagatggataaagataatagccacaagatcggaaccaataaag |
117 |
Q |
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| T |
32378391 |
caaacatgcgttagtataaatcttaccgctaagacaaacacttagtgatttagacggaagatggataaagataatagccacaagatcggaaccaataaag |
32378490 |
T |
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| Q |
118 |
ctctccaagaagaaatatgaagaatgtatattggcatggacatggcttggaaggaaggtgtctcccatctcagtgtgactctaaagttctcattgatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32378491 |
ctctccaagaagaaatatgaagaatgtatattagcatggacatggcttggaaggaaggtgtctcccatctcagtgtgactctaaagttctcattgatttt |
32378590 |
T |
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| Q |
218 |
agttactaacaattgtactatgaaaggttgtatttgtac |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32378591 |
agttactaacaattgtactatgaaaggttgtatttgtac |
32378629 |
T |
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