View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_4 (Length: 487)
Name: NF17248_high_4
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 470
Target Start/End: Complemental strand, 43282108 - 43281641
Alignment:
| Q |
12 |
aagaaaataaatgttgcataaagcaaagaactagtccaaatccaccgtctgcaataactcatttccctaaaaatttcaacaaaat-ggtggaaccacttc |
110 |
Q |
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| T |
43282108 |
aagaaaataaatgttgtataaagcaaagaactcgtccaaatccac-gtctgcaataactcatgtccctaaaaatttcaacaaaattggtggaaccacttc |
43282010 |
T |
|
| Q |
111 |
ttcaaggagcaacaataacatttgtatgaagtatgaaccaagttnnnnnnnccaaaacaagaaaatctatgtatatgggtaaacgacctcaattgactgc |
210 |
Q |
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| T |
43282009 |
ttcaaggagcaacaataacatttgtatgaagtatgaaccaagttaaaaaa-ccaaaacaagaaaatctatgtatatgggtaaacgacctcaattgactgc |
43281911 |
T |
|
| Q |
211 |
gattttatgttacatttaaatagcacagggacttggcaattgttaatttgacgcaaataaagagacaaagtgattaggttatgctt----------tctt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43281910 |
gattttatgttacatttaagtagcacagggacttggcaattgttaatttgacgcaaataaagagacaaagtgattaggttatgcttcattcccctttctt |
43281811 |
T |
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| Q |
301 |
ttagtgcttggtaataactaagtctcttttctacgatccttccaaagtggctttaaagacatttgaacatagtagctagctccatcgttggacactcgca |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43281810 |
ttagtgcttagtaataactaagtctcttttctacgatccttccaaagtggctttaaagacatttgaacatagtagctagctccatcgttggacactagca |
43281711 |
T |
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| Q |
401 |
tccatttcttagaaaggtttccttttggtccagaaactagcactctttttataatcaaaacaccctatgt |
470 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43281710 |
tccatttctcagaaaggtttccttttggtccagaaactagcactctttttataatcaaaacaccctatgt |
43281641 |
T |
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