View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_40 (Length: 239)
Name: NF17248_high_40
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 5062524 - 5062336
Alignment:
| Q |
19 |
tttgtttgaccgggagagttttctccaaaacttttgagtctatttttatnnnnnnnnnnnnnntgttagaaaaaatatggataaggatctgtgacctcnn |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5062524 |
tttgtttgcccgggagagttttctccaaaacttttgagtctatttttataaaaaaaaa-----tgttagaaaaaatatggataaggatctgtgacctctt |
5062430 |
T |
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| Q |
119 |
nnnnnctataaaaaactagtatatatacattnnnnnnnnnnngaagtaacggacggtcctaaactatatttgttcgacagctttgacctatttttcacgt |
218 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5062429 |
tttttctatgaaaaactaatatatatacataaaaa--------aagtaacggacggtcctaaactatatttgttcgacaactttgacctatttttcacgt |
5062338 |
T |
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