View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_45 (Length: 231)
Name: NF17248_high_45
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 28783249 - 28783438
Alignment:
| Q |
24 |
gaatggcacaaacggaactatagatgctttatagtcgcagatttattctccaataaaatatactacataagtagaatagtaaaaaagattaacttgcctg |
123 |
Q |
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| T |
28783249 |
gaatggcacaaacggaactatagatgctttatagtcgcagatttaatctccaataaaatatactacagaagtagaatagaaaagaagaagaacttgcctg |
28783348 |
T |
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| Q |
124 |
tagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
213 |
Q |
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| T |
28783349 |
tagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaatccacttgttctggtgaaaaacttggaggccaccaat |
28783438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 28742355 - 28742454
Alignment:
| Q |
114 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
213 |
Q |
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| T |
28742355 |
aacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaatccactttcccttgtgaagaacttgaaggccaccaat |
28742454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 28700269 - 28700368
Alignment:
| Q |
114 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
213 |
Q |
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| T |
28700269 |
aacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccggtggtacatcgatccacttgtcttggtgaagaacttgaaggccaccaat |
28700368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 28735273 - 28735372
Alignment:
| Q |
114 |
aacttgcctgtagaagatcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccaccaat |
213 |
Q |
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| T |
28735273 |
aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccaccaat |
28735372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 16439346 - 16439266
Alignment:
| Q |
130 |
atcaccaacattaacaacaagagcatcatgtattggaggtatatcaatccacttgttctggtgaagaacttggaggccacc |
210 |
Q |
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| T |
16439346 |
atcaccgatattaacaacaagagcctcatgtagaggaggtacatcaatccacatatctttatgaagaacttggagaccacc |
16439266 |
T |
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