View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_49 (Length: 218)
Name: NF17248_high_49
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 129321 - 129134
Alignment:
| Q |
14 |
cactttccaccaaaacatttcttgttcattttaactttgtcttcatagaaactttttaacacattttcaaaagctgcaacatcatttagccaattttgta |
113 |
Q |
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| T |
129321 |
cactttccaccaaaacatttcttgttcattttaactttgtcttcatagaaactttttaacacattttcaaaagctgcaacatcatttagccaattttgta |
129222 |
T |
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| Q |
114 |
tgttaggttcaattccttctctattcattctttttgtgtccacccatccttgtagtgcttctttaacaccctccaacttatcgtgttc |
201 |
Q |
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| T |
129221 |
tgttaggttcaattccttctctattcattctttttgtgtccacccatccttgtagtgcttctttaacaccctccaacttatcgtgttc |
129134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 34555475 - 34555662
Alignment:
| Q |
14 |
cactttccaccaaaacatttcttgttcattttaactttgtcttcatagaaactttttaacacattttcaaaagctgcaacatcatttagccaattttgta |
113 |
Q |
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| T |
34555475 |
cactttccaccaaaacatttcttgttcatcttaactttttcttcgtagaaactttgtaacacattttcaaatgctgcaacgtcattgagccacttttcta |
34555574 |
T |
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| Q |
114 |
tgttaggttcaattccttctctattcattctttttgtgtccacccatccttgtagtgcttctttaacaccctccaacttatcgtgttc |
201 |
Q |
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| T |
34555575 |
tgttaggttcagttccttctctattcattctttttgtgtcaacccatgcttgtagagcttctttgacacccttcaacttattgtgttc |
34555662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 34371039 - 34370995
Alignment:
| Q |
32 |
ttcttgttcattttaactttgtcttcatagaaactttttaacaca |
76 |
Q |
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||||||||| | |||||||||| |||||||||||||| ||||||| |
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| T |
34371039 |
ttcttgttcttgttaactttgttttcatagaaactttctaacaca |
34370995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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