View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_8 (Length: 451)
Name: NF17248_high_8
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 42 - 429
Target Start/End: Original strand, 10851106 - 10851492
Alignment:
| Q |
42 |
actatacttgaaagacaattggaccaacttactaaactaagtcctaactattgtgataagtattgaaa--------tttgatgagtatattattacctac |
133 |
Q |
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| T |
10851106 |
actatacttgaaagacaattagaacaacttactaaactaagtcctaagaat-gtaataagtattgaaaaggtgaaatttgatgagtat--------ctac |
10851196 |
T |
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| Q |
134 |
caaatggttttggtagtttttccagacgaaagagttgatagctgggcgtctcccctgtatatagcagatggtatgttttataaaaccgtaaaatttagca |
233 |
Q |
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||||| |||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
10851197 |
caaatagttttgatagtttttccagacgaaagaattgacagctgggcgtctcccctgtatatagcagatagtatgttttataaaaccataaaatttagca |
10851296 |
T |
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| Q |
234 |
taatatatctcctcttctctacttaagtcatcctgtaatctatcctctatggagctgcccttgctagggacgtcgttgagccccgatatccatatgttcc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10851297 |
taatatatctcctcttctctacttaagtcatcctgtaatctatcctctatggagcttcccttgctagggacgtcgttgagccccgatatccatatgttcc |
10851396 |
T |
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| Q |
334 |
gcacccgtttcactgactccgactccgacgaaaactgacgacggagctgatggaaactggaagaagagagaaaggatgaccttgaaaaacgaccca |
429 |
Q |
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| T |
10851397 |
gcacccgtttcactgactccgactccgacgaaaactgacggcggagctgctggaaactggaagaagagagaaaggaggaccttgaaaaacgaccca |
10851492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 42 - 429
Target Start/End: Original strand, 10878620 - 10878994
Alignment:
| Q |
42 |
actatacttgaaagacaattggaccaacttactaaactaagtcctaactattgtgataagtattgaaa--------tttgatgagtatattattacctac |
133 |
Q |
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| T |
10878620 |
actatacttgaaagacaattagaacaacttactaaactaagtcctaagaat-gtaataagtattgaaaaggtgaaatttgatgagtat--------ctac |
10878710 |
T |
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| Q |
134 |
caaatggttttggtagtttttccagacgaaagagttgatagctgggcgtctcccctgtatatagcagatggtatgttttataaaaccgtaaaatttagca |
233 |
Q |
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||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10878711 |
caaatagttttgatagtttttccagacgaaagaattgatagctgggcgtctcccctgtatatagcagatagtatgttttataaaaccgtaaaatttagca |
10878810 |
T |
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| Q |
234 |
taatatatctcctcttctctacttaagtcatcctgtaatctatcctctatggagctgcccttgctagggacgtcgttgagccccgatatccatatgttcc |
333 |
Q |
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| T |
10878811 |
taatatatctcctcttctctacttaagtcatcctgtaatctat------------tggccttgctaggaacgtcgttaagccccgatatccatatgttcc |
10878898 |
T |
|
| Q |
334 |
gcacccgtttcactgactccgactccgacgaaaactgacgac---ggagctgatggaaactggaagaagagagaaaggatgaccttgaaaaacgaccca |
429 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
10878899 |
gcacccgtttcactgacgacgactctgacgaaaactgacgacggaggagctgctggaaact---tgaagagagaaaggaggaccttgaaaaacgaccca |
10878994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 312 - 429
Target Start/End: Original strand, 10864929 - 10865046
Alignment:
| Q |
312 |
agccccgatatccatatgttccgcacccgtttcactgactccgactccgacgaaaactgacgacggagctgatggaaactggaagaagagagaaaggatg |
411 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
10864929 |
agccccgagatccatatgttgcgcacccgtttcactgactgcgactccgacgaaaactgacgacggagctgctggaaactggaagaagagagaaaggagg |
10865028 |
T |
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| Q |
412 |
accttgaaaaacgaccca |
429 |
Q |
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|||||||||||||||||| |
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| T |
10865029 |
accttgaaaaacgaccca |
10865046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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