View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_high_9 (Length: 445)
Name: NF17248_high_9
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 254 - 431
Target Start/End: Complemental strand, 42141631 - 42141451
Alignment:
| Q |
254 |
tgttgaaagttacactatcaattatcaaactttgcagacaaaaacaacatcatcatcaattctttacgttcaaaatattccaattcatctaatctatccc |
353 |
Q |
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| T |
42141631 |
tgttgaaagttacaccgtcagttatcaaactttgtagacaaaaacaacatcatcatcaattctttgcgttcaaaatattccaattcatccaatccatccc |
42141532 |
T |
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| Q |
354 |
atcaaaatatatttgagaataaaatgaaac----aaaaaatcaaatagtcaatcccattttctttttctccgtagcctatgt |
431 |
Q |
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| T |
42141531 |
atcaaaatagatttgagaataaaatgaaaagaaaaaaaaaacaaatagtcaa-cccattttctttttctccgtagcctatgt |
42141451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 42141804 - 42141655
Alignment:
| Q |
112 |
attcatgtcatttaactaaaaatagtttttctcttctacaattattttattcctattttgtctagacatacataacacaaaaacttcaag-acatgtgac |
210 |
Q |
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| T |
42141804 |
attcatgtcatttaattaaaaatagtttttctcttctccaattattttattcctattttgtctagacatacataacacaaaaactttgagaaaatgacac |
42141705 |
T |
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| Q |
211 |
caa-caaccttattcatatatgtaatcattaacaactattaatatgttgaa |
260 |
Q |
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| T |
42141704 |
caacctaccttattcatatgtgcaatca-taacaactattaatatgttgaa |
42141655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 42141926 - 42141833
Alignment:
| Q |
19 |
acaatgcacttggaagcttcttcatgctccataggccgaatattatgacttaattagatcattgctgcaaaacgttgtaatctcaagtaaggaattca |
116 |
Q |
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| T |
42141926 |
acaatgcacttggaagcttcttcatgctctataggccgaatattatgac----ttagatcattgctgcaaaacatggtaatctcaagtaaggagttca |
42141833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 40885800 - 40885748
Alignment:
| Q |
337 |
ttcatctaatctatcccatcaaaatatatttgagaataaaatgaaacaaaaaa |
389 |
Q |
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| T |
40885800 |
ttcatctgatcaatcctattaaaatgtatttgagaataaaatgaaacataaaa |
40885748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 25520163 - 25520224
Alignment:
| Q |
258 |
gaaagttacactatcaattatcaaactttgcagacaaaaacaacatcatcatcaattcttta |
319 |
Q |
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| T |
25520163 |
gaaaggtacactatcaattatcaaactttgcagacaaaaacaacatcatcatcaattcttta |
25520224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 7052646 - 7052597
Alignment:
| Q |
255 |
gttgaaagttacactatcaattatcaaactttgcagacaaaaacaacatc |
304 |
Q |
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| T |
7052646 |
gttgaaagttaccccataatttatcaaactttgaagacaaaaacaacatc |
7052597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 8550540 - 8550587
Alignment:
| Q |
125 |
aactaaaaatagtttttctcttctacaattattttattcctattttgtcta |
175 |
Q |
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| T |
8550540 |
aactaaaaatagtttttctctt---caattattttaatcctattttgtcta |
8550587 |
T |
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