View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_1 (Length: 743)
Name: NF17248_low_1
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 18 - 732
Target Start/End: Original strand, 50275201 - 50275919
Alignment:
| Q |
18 |
aaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275201 |
aaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaat |
50275300 |
T |
|
| Q |
118 |
aagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtctggaaagcttggccattgaaagagccatttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50275301 |
aagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtgtggaaagcttggccattgaaagagccatttga |
50275400 |
T |
|
| Q |
218 |
cccatatactcagcaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatctt |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
50275401 |
cccatatactcaacaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatctt |
50275500 |
T |
|
| Q |
318 |
cagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275501 |
cagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaa |
50275600 |
T |
|
| Q |
418 |
aaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctct----ataaagtcttg |
513 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50275601 |
atacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctctataaataaagtcttg |
50275700 |
T |
|
| Q |
514 |
atgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcgaac |
613 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50275701 |
atgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcaaac |
50275800 |
T |
|
| Q |
614 |
aaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacat |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275801 |
aaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacat |
50275900 |
T |
|
| Q |
714 |
cagcctttgcacctatgct |
732 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50275901 |
cagcctttgcacctatgct |
50275919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 18 - 732
Target Start/End: Original strand, 50279225 - 50279943
Alignment:
| Q |
18 |
aaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279225 |
aaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaat |
50279324 |
T |
|
| Q |
118 |
aagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtctggaaagcttggccattgaaagagccatttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
50279325 |
aagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtgtggaaagcttggccattgaaagagccatttga |
50279424 |
T |
|
| Q |
218 |
cccatatactcagcaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatctt |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
50279425 |
cccatatactcaacaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatctt |
50279524 |
T |
|
| Q |
318 |
cagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279525 |
cagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaa |
50279624 |
T |
|
| Q |
418 |
aaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctct----ataaagtcttg |
513 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50279625 |
atacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctctataaataaagtcttg |
50279724 |
T |
|
| Q |
514 |
atgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcgaac |
613 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50279725 |
atgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcaaac |
50279824 |
T |
|
| Q |
614 |
aaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacat |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279825 |
aaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacat |
50279924 |
T |
|
| Q |
714 |
cagcctttgcacctatgct |
732 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50279925 |
cagcctttgcacctatgct |
50279943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 628 - 732
Target Start/End: Complemental strand, 14462668 - 14462564
Alignment:
| Q |
628 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
14462569 |
T |
|
| Q |
728 |
atgct |
732 |
Q |
| |
|
||||| |
|
|
| T |
14462568 |
atgct |
14462564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 618 - 732
Target Start/End: Complemental strand, 22610283 - 22610169
Alignment:
| Q |
618 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
717 |
Q |
| |
|
|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
|
| Q |
718 |
ctttgcacctatgct |
732 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
22610183 |
ctttgcccctatgct |
22610169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 22610691 - 22610624
Alignment:
| Q |
257 |
gaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
324 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
22610691 |
gaggaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 689
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
618 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
689 |
Q |
| |
|
|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
|
|
| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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