View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_13 (Length: 424)
Name: NF17248_low_13
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 32467884 - 32468278
Alignment:
| Q |
17 |
tgcaaggggagagaaattaatgtaacgaggcaaaactataaatacaaaagaaacccaaaatcattaaatcacacttatacatgtcaacggttcttaaaaa |
116 |
Q |
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| T |
32467884 |
tgcaaggggagagaaattaatgtaacgaggcaaaactataaatccaaaagaaacccaaaatcattaaaccacacctatacatgtcaacggttcttaaaaa |
32467983 |
T |
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| Q |
117 |
taattttttacaagaatnnnnnnnnnncattaagtaaaaaattgtcacataaaatcaagatggttggtgctgtttaacttcatttgattgtttagtgaat |
216 |
Q |
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| T |
32467984 |
taattttttacaagaataaaaaaaaat-attaagtaaaaaattgtcacataaaatcaagatggttggtgctgtttaacttcatttgattgtttggtgaat |
32468082 |
T |
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| Q |
217 |
gtgacttagagaaagaagaagatgatgagtcacaaaggttatgaggtgaaaataatgagaatggagtatcattcaaggaagttgatggg-ttttttatga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32468083 |
gtgacttagagaaagaagaagatgatgagtcacaaaggttatgaggtgaaaataatgagaatggagtatcattcaaggaagttgatgggtttttttatga |
32468182 |
T |
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| Q |
316 |
gcatagttgtgtagtgttgttttgagaaatgtgagttcacttcctatgaatttgtttatttgctatattatttccctttgtttttcagttctcttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32468183 |
gcatagttgtgtagtgttgttttgagaaatgtgagttcacttcctatggatttgtttatttgctctattatttccctttgtttttcagttctcttc |
32468278 |
T |
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