View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_14 (Length: 402)
Name: NF17248_low_14
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 32098598 - 32098949
Alignment:
| Q |
18 |
aatgcagtgtcatgtgtgtttgttctaacaattacttataactattaatttacctgaggatggtagttgaacttgtagcaaattacccaccggttcttca |
117 |
Q |
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| T |
32098598 |
aatgcagtgtcatgtgtgtttgttctaacaattactaatgactattaatttacctgaggatggtagttgaacttgtagcaaattacccaccggttcttca |
32098697 |
T |
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| Q |
118 |
atcgggccccacctttgtgttgaatcggttttgtacgagtccacgtgttctaacgggtttccttgattactcacaactaataaatgaaaatctgaatcta |
217 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32098698 |
attgggccccacctttgtgttaaatcggttttgtacgagtccacgtgtcctaacgggtttccttgattactcacaactaataaatgaaaatctgaatcta |
32098797 |
T |
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| Q |
218 |
aattatttgacccgtcgtttggcgacccgatccgaatatcatcggacatttcaatttgcatcaactcacttggctctacaatagccgtcatcgaggttgc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32098798 |
aatgatttgacccgtcgtttggcgacccgatccgaatatcatcgggcatttcaatttgcatcaactcacttggctctacaatagccgtcattgaggttgc |
32098897 |
T |
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| Q |
318 |
acgtcggatacgacctcctgtttcgtcttcagactcggattcaacttcgtcg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32098898 |
acgtcggatacgacctcctgtttcgtcttcagactcggattcaacttcgtcg |
32098949 |
T |
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