View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_17 (Length: 385)
Name: NF17248_low_17
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 16267632 - 16267992
Alignment:
| Q |
19 |
attgtaacacacattgtatagagaacggtgcaatctcatcatcatgttactactacaacaaatgcacttgttttttcgatacgacatcatctactaccac |
118 |
Q |
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| T |
16267632 |
attgtaacacacattgtatagagaacggtgcaatctcatcatcatgttactactacaacaaatgcacttgttttttcgatacgacatcatctactaccac |
16267731 |
T |
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| Q |
119 |
aatttcagaagtaccaaggtgcagttttgggtatggactttgcgaagatgattgtgattcaaactgtttcagttcaagatgtgccagaaaatacagcttc |
218 |
Q |
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| T |
16267732 |
aatttcagaagtaccaaggtgcagttttgggtatggaatttgcgaagatgattgtgattcaaactgttgcagttcaagatgtgccagaaaatacagcttc |
16267831 |
T |
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| Q |
219 |
ttcagcaaatatattactgggacatgtgctcaatatgtgggcaatgatcttcaatatctgaacgataggtattgcatttgtgaatataacgatgaagaat |
318 |
Q |
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| T |
16267832 |
ttcaacaaatatattactgggacatgtgctcaatatgttggcaatgatcttcaatatctgaacgataggtattgcatttgtgaatatgacgatgaagaat |
16267931 |
T |
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| Q |
319 |
attgaattgctttaaatccttgccaattgaaaatcataaatgtaataaaaacctatgctact |
380 |
Q |
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| T |
16267932 |
attaaattgctttaaatccttgccaattg-aaatcataaatgtactaaaaacctatgttact |
16267992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 16240266 - 16240322
Alignment:
| Q |
130 |
taccaaggtgcagttttgggtatggactttgcgaagatgattgtgattcaaactgtt |
186 |
Q |
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| T |
16240266 |
taccaatgtgcagtctagggtatggactttgcgacgctaattgtgattcaaactgtt |
16240322 |
T |
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