View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_22 (Length: 339)
Name: NF17248_low_22
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 18460373 - 18460694
Alignment:
| Q |
1 |
aagatattagaaggtttaatgttagtgagcaattagctcctaggttccatggaaatggtgtttctctaactcttggactacctcataatgaaaatatccc |
100 |
Q |
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| T |
18460373 |
aagatattagaaggtttaatgttagtgagcaattagctcctaggttccatggaaatggtgtttctctaactcttggactacctcataatgaaaatatccc |
18460472 |
T |
|
| Q |
101 |
tctctcttcaacccaacatggatttctctctcagaatttacatttaggagggaccattgatgaaatgggaagcaatgagaatgagttttgtacgatcaac |
200 |
Q |
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| T |
18460473 |
tctctcttcaacccaacatggatttctctctcagaatttacatttaggagggacgattgatgaaatgggaagcaatgagaatgagttttgtaccatcaac |
18460572 |
T |
|
| Q |
201 |
accactccttctcattcagaaacaaattatgagagtattgatattgaaaacagaaagaggtttgctgctcagttattgcgaaattttgtgacctagatat |
300 |
Q |
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| T |
18460573 |
actactccttctcattcagaaacaaattatgagagtattgatattgaaaacagaaagaggtttgctgctcagttattgcgaaattttgtgacctagaaat |
18460672 |
T |
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| Q |
301 |
taatgtgattttgacaaaaact |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18460673 |
taatgtgattttgacaaaaact |
18460694 |
T |
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