View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_23 (Length: 330)
Name: NF17248_low_23
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 22788836 - 22789141
Alignment:
| Q |
20 |
gttagcttgttagattacttatcctttgat-aggcaccattgatccttcacacatcacataaaaatttgaacaagttgatgaatgaagagtcattttagt |
118 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22788836 |
gttagcttgttagattacttatcctttcattaggcaccattgatccttcacacatcacataaaaatttgaacaacttgatgaatgaagagtcattttagt |
22788935 |
T |
|
| Q |
119 |
acatattagagacagctacatcaaatcaaagaggtaaacatcaaactcaatcttgacaactatatgtggtcgtgcgaagagtccctctaacatggtctcg |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22788936 |
acatattagagacaactacatcaaatcaaagaggtaaacatcaaactcaatcttgacaactatatgtggtcgtgcgaagagtccctctaacatggtctcg |
22789035 |
T |
|
| Q |
219 |
tgtgtcctcttctcaagtctatctcctgaccatgtgttccagcaaacttcaatgcaaagttttaaaaatatggtccgcaacattgattatatggttttca |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22789036 |
tgtgtcctcttctcaagtctatctccagaccatgtgttccagcaaacttcaatgcaaagttttaaaaatatggtccgcaacattgattatatggttttca |
22789135 |
T |
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| Q |
319 |
tctcac |
324 |
Q |
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| |||| |
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| T |
22789136 |
tatcac |
22789141 |
T |
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