View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_24 (Length: 326)
Name: NF17248_low_24
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 24562087 - 24561960
Alignment:
| Q |
1 |
aaatttaatttgtatgcgccaacgatgtgaaacacttttatagtacatatactttctatgttctaaattataagcaaaagtaattcaacaaaaaatggtg |
100 |
Q |
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| T |
24562087 |
aaatttaatttgtatgcaccaacaatatgaaacatttttatagtacatatactttctatgttttaaattataagcaaaagtaattcaacaaaaaatgatg |
24561988 |
T |
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| Q |
101 |
tatttggtccaaaattttaaccaaatat |
128 |
Q |
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| T |
24561987 |
catttggtccaaaattttaaccaaatat |
24561960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 143 - 311
Target Start/End: Complemental strand, 24561877 - 24561727
Alignment:
| Q |
143 |
caaatgtctaaatcataagatataattagatgcacgtgtaaaatagttatgcgctctaagtacatacaaattaaatcattaactcaacctcacactatat |
242 |
Q |
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| T |
24561877 |
caaatgtataaatcataagatataattagatgcacgtgtaaaata----------------acatacaaattaaatcattaactcaacctcacactat-- |
24561796 |
T |
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| Q |
243 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccgcaggcactgaagaagaggctg |
311 |
Q |
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| T |
24561795 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccacaggcactgaagaagaggctg |
24561727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 22547534 - 22547574
Alignment:
| Q |
90 |
aaaaaatggtgtatttggtccaaaattttaaccaaatatat |
130 |
Q |
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| T |
22547534 |
aaaaaatgatgtatttggtctaaaatttgaaccaaatatat |
22547574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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