View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17248_low_27 (Length: 314)

Name: NF17248_low_27
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17248_low_27
NF17248_low_27
[»] chr8 (5 HSPs)
chr8 (9-294)||(5032688-5032971)
chr8 (227-294)||(42200652-42200719)
chr8 (246-292)||(8687872-8687918)
chr8 (240-294)||(29546897-29546951)
chr8 (258-294)||(17521289-17521325)
[»] chr3 (8 HSPs)
chr3 (227-287)||(1456530-1456590)
chr3 (227-291)||(26983380-26983444)
chr3 (227-294)||(38387976-38388043)
chr3 (227-294)||(55066590-55066657)
chr3 (240-294)||(10922311-10922365)
chr3 (238-292)||(35126270-35126324)
chr3 (240-292)||(1111844-1111896)
chr3 (238-294)||(17588366-17588422)
[»] chr2 (6 HSPs)
chr2 (228-293)||(30089054-30089119)
chr2 (228-293)||(30125658-30125723)
chr2 (248-294)||(1238166-1238212)
chr2 (228-294)||(15427696-15427762)
chr2 (227-293)||(24592836-24592902)
chr2 (234-275)||(32861915-32861956)
[»] chr1 (7 HSPs)
chr1 (240-293)||(2884451-2884504)
chr1 (227-294)||(16033440-16033507)
chr1 (227-294)||(30382500-30382567)
chr1 (227-294)||(34766864-34766931)
chr1 (227-292)||(37185655-37185720)
chr1 (238-294)||(32007598-32007654)
chr1 (227-275)||(34632192-34632240)
[»] chr5 (5 HSPs)
chr5 (243-294)||(781867-781918)
chr5 (227-294)||(6489011-6489078)
chr5 (244-294)||(11310458-11310508)
chr5 (235-292)||(40445989-40446046)
chr5 (231-291)||(3389169-3389229)
[»] chr4 (3 HSPs)
chr4 (227-294)||(12698601-12698667)
chr4 (244-294)||(18635534-18635584)
chr4 (240-292)||(7248342-7248394)
[»] scaffold0016 (1 HSPs)
scaffold0016 (240-294)||(99041-99095)
[»] scaffold0008 (1 HSPs)
scaffold0008 (261-294)||(119573-119606)
[»] chr7 (10 HSPs)
chr7 (227-276)||(6556155-6556204)
chr7 (227-288)||(16537526-16537587)
chr7 (227-288)||(16577850-16577911)
chr7 (227-288)||(16587751-16587812)
chr7 (227-288)||(16628075-16628136)
chr7 (265-294)||(43753191-43753220)
chr7 (230-294)||(1079685-1079749)
chr7 (232-276)||(39919259-39919303)
chr7 (242-294)||(42753432-42753484)
chr7 (240-292)||(43680993-43681045)
[»] chr6 (3 HSPs)
chr6 (227-288)||(14049874-14049935)
chr6 (228-293)||(33824886-33824951)
chr6 (240-288)||(14918303-14918351)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 5032688 - 5032971
Alignment:
Q  9 gaaatgaaggtatatcatttaaatttgcacacacaactataaaatctaggcttttgtgtttgaattagggtaaaggtgcatataaagctatgagtattgt 108  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5032688 gaaaagaacgtatatcatttaaatttgcacacacaactataaaatctaggcttttgtgtttgaattagggtaaaggtgcatataaagctatgagtattgt 5032787  T
Q  109 taannnnnnnnngttacaaaaatttagaagttaaggtaagagaatagtatcacagcttaagacatgaaagaccttcaattttatgtataaaagtatttgc 208  Q
    |||         |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5032788 taa-ttttttttgttacaaaaatttagaagttaaggtaagagaatagtatgacagcttaaggcatgaaagaccttcaattttatgtataaaagtatttgc 5032886  T
Q  209 gtttatttcnnnnnnnnngtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||         |||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  5032887 gtttatttc-atttttttgtggtggccggggtttgaactccggatcatgtatatattatacattgtcccaaccaactgagttaagc 5032971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 42200652 - 42200719
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||| || || |||||||| |||| |||| ||||||||||||||||||| |||||||||| |||||    
T  42200652 gtggtgaccaaggtttgaacctcagaccatgcatatattatacattgtccctatcaactgagctaagc 42200719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 8687918 - 8687872
Alignment:
Q  246 ccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||| |||||||||||||||||||||| | ||| ||||||||    
T  8687918 ccccagatcttgtatatattatacattgtccctaccaattgagttaa 8687872  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 29546951 - 29546897
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||||||| | || |||||||||  |||||||| ||||||||||||||||    
T  29546951 tttgaaccccagaccttgcatatattatctattgtccctatcaactgagttaagc 29546897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 17521289 - 17521325
Alignment:
Q  258 tatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17521289 tatatattatacattgtccttatcaactgagttaagc 17521325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 1456530 - 1456590
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactga 287  Q
    |||||||||||| |||||||| |||| | || ||||||||||||||||||| |||||||||    
T  1456530 gtggtggccgagttttgaacctcagaccttgcatatattatacattgtccctatcaactga 1456590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 26983444 - 26983380
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagtta 291  Q
    ||||||| ||||||| ||| |||||| | |  |||||||||||||||||| ||||||||||||||    
T  26983444 gtggtggtcgagattcgaatcccagaccttacatatattatacattgtcctaatcaactgagtta 26983380  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 38388043 - 38387976
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||| ||||||||||| || |||||| || ||||||||| ||||||| | |||||||||| |||||    
T  38388043 gtggtgaccgagatttgagcctcagatcttgcatatattatgcattgtcactatcaactgagctaagc 38387976  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 55066590 - 55066657
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||| |||  | |||||||| |||||    
T  55066590 gtggtggccgggatttgaaccccagaccatgcatatattatgcattatccgtaccaactgagctaagc 55066657  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 10922311 - 10922365
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||| |||| || ||||||||| ||||||||| | ||||||||||||||    
T  10922311 tttgaaccccggatcttgcatatattatgcattgtccctaccaactgagttaagc 10922365  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 35126270 - 35126324
Alignment:
Q  238 gatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||||||||||| || ||||||||| |||| |||| | ||||||||||||    
T  35126270 gatttgaaccccagatcttgcatatattatgcattatccctaccaactgagttaa 35126324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 1111844 - 1111896
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||||||| | || |||||||||  |||||||| ||||||||||||||    
T  1111844 tttgaaccccagaccttgcatatattatgtattgtccctatcaactgagttaa 1111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 17588422 - 17588366
Alignment:
Q  238 gatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||| |||||||||||| || ||||||||| ||||||||  | ||||||||||||||    
T  17588422 gattcgaaccccagatcttgcatatattatgcattgtccttaccaactgagttaagc 17588366  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 30089119 - 30089054
Alignment:
Q  228 tggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaag 293  Q
    ||||||||||| |||||||||| || | |||||||||||| ||||||||| | |||||||| ||||    
T  30089119 tggtggccgaggtttgaaccccggaccttgtatatattatgcattgtccctaccaactgagctaag 30089054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 30125723 - 30125658
Alignment:
Q  228 tggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaag 293  Q
    ||||||||||| |||||||||| || | |||||||||||| ||||||||| | |||||||| ||||    
T  30125723 tggtggccgaggtttgaaccccggaccttgtatatattatgcattgtccctaccaactgagctaag 30125658  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 1238212 - 1238166
Alignment:
Q  248 ccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||| |||||||||||| ||||||||| ||||| ||||||||||    
T  1238212 ccagatcttgtatatattatgcattgtccctatcaattgagttaagc 1238166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 15427762 - 15427696
Alignment:
Q  228 tggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||| |||||||||||| ||| | || |||||||||| |||||||  |||||||||| |||||    
T  15427762 tggtggccaagatttgaaccctagaccttgcatatattatatattgtccatatcaactgagctaagc 15427696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 24592836 - 24592902
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaag 293  Q
    |||||||||| | ||||||||||||| | || ||||||||| ||||||||| | |||||||| ||||    
T  24592836 gtggtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaag 24592902  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 32861956 - 32861915
Alignment:
Q  234 ccgagatttgaaccccagatcatgtatatattatacattgtc 275  Q
    |||||||| |||||| ||||| ||||||||||||||||||||    
T  32861956 ccgagattcgaaccctagatcttgtatatattatacattgtc 32861915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 2884451 - 2884504
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaag 293  Q
    |||||||||| |||| |||||||||||| ||||||||  |||||||||||||||    
T  2884451 tttgaacccccgatcttgtatatattatgcattgtccatatcaactgagttaag 2884504  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 16033440 - 16033507
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||||   ||||||||||||| | || ||||||||| ||||||||| ||||||||||| ||||    
T  16033440 gtggtggccggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagc 16033507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 30382567 - 30382500
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||||| ||||||| ||||| | || |||| |||| |||||||| || ||||||||||||||    
T  30382567 gtggtggccgaggtttgaacgccagaccttgcatattttatgcattgtccaaaccaactgagttaagc 30382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 34766931 - 34766864
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||||| || |||||||||| | || || |||||||||||||||  | ||||||||||||||    
T  34766931 gtggtggccgaggttcgaaccccagaccttgcatgtattatacattgtccataccaactgagttaagc 34766864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 37185655 - 37185720
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||||||||||||| || |||  ||| |||| | || ||||||||| ||||||||||||||    
T  37185655 gtggtggccgagatttgaatcctagacaatgcatatttgatgcattgtccctatcaactgagttaa 37185720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 32007598 - 32007654
Alignment:
Q  238 gatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||||| || | ||||||| |||| |||||||||||  |||||||||||||    
T  32007598 gatttgaaccccggaccttgtatattttatgcattgtcccaacgaactgagttaagc 32007654  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 34632240 - 34632192
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtc 275  Q
    |||||||||| |||||||||| | |||| || |||||||||||||||||    
T  34632240 gtggtggccgggatttgaacctcggatcttgcatatattatacattgtc 34632192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 781918 - 781867
Alignment:
Q  243 gaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||| | || |||| |||||||||||||| ||||||||||||||||    
T  781918 gaaccccagaccttgcatattttatacattgtccctatcaactgagttaagc 781867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 6489078 - 6489011
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||| | ||||||||||||| | || ||||||||| ||||||||| | |||||||| |||||    
T  6489078 gtggtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagc 6489011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 11310458 - 11310508
Alignment:
Q  244 aaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||||| || |||||||||||||||||| || |||||||| |||||    
T  11310458 aaccccagatcttgcatatattatacattgtccaaaccaactgagctaagc 11310508  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 40446046 - 40445989
Alignment:
Q  235 cgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||||||| |||| | || ||||||||| ||||||||  ||||||||||||||    
T  40446046 cgagatttgaacctcagaccttgcatatattatgcattgtccttatcaactgagttaa 40445989  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 3389229 - 3389169
Alignment:
Q  231 tggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagtta 291  Q
    |||||||  ||||||||||||||| || ||||||||| ||||||||  | |||||||||||    
T  3389229 tggccgatgtttgaaccccagatcttgcatatattatgcattgtccataccaactgagtta 3389169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 12698667 - 12698601
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||| ||||| |||||||||| | || ||||||||| |||||||| ||||||||||| |||||    
T  12698667 gtggtggcc-agattcgaaccccagaccttgcatatattatgcattgtccaaatcaactgagctaagc 12698601  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 18635584 - 18635534
Alignment:
Q  244 aaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||| | |||||||||||| ||||||||  ||||||||||||||||    
T  18635584 aaccccagaccttgtatatattatgcattgtccttatcaactgagttaagc 18635534  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 7248394 - 7248342
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||| ||| | || |||| |||| ||||||||||||||||||||||||    
T  7248394 tttgaaccctagaccttgcatattttatgcattgtcccaatcaactgagttaa 7248342  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 99095 - 99041
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||||||| | || ||||||||| ||||||||| ||||||||||| ||||    
T  99095 tttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagc 99041  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 119606 - 119573
Alignment:
Q  261 atattatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||||||||||| ||||||||||||||||    
T  119606 atattatacattgtccctatcaactgagttaagc 119573  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 6556204 - 6556155
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcc 276  Q
    |||||||||||| ||||||| ||||||| |  ||||||||||||||||||    
T  6556204 gtggtggccgaggtttgaacaccagatcttacatatattatacattgtcc 6556155  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 16537526 - 16537587
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgag 288  Q
    |||||| ||||| ||||||||||||| | |||||||||||| |||| |||| | ||||||||    
T  16537526 gtggtgaccgaggtttgaaccccagaccttgtatatattatgcattatccctaccaactgag 16537587  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 16577850 - 16577911
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgag 288  Q
    |||||||||||| ||||||||||||| | || |||||||||  |||||||| | ||||||||    
T  16577850 gtggtggccgaggtttgaaccccagaccttgcatatattatgtattgtccctaccaactgag 16577911  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 16587812 - 16587751
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgag 288  Q
    |||||||||||| ||||||||||||| | || |||||||||  |||||||| | ||||||||    
T  16587812 gtggtggccgaggtttgaaccccagaccttgcatatattatgtattgtccctaccaactgag 16587751  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 16628136 - 16628075
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgag 288  Q
    |||||| ||||| ||||||||||||| | |||||||||||| |||| |||| | ||||||||    
T  16628136 gtggtgaccgaggtttgaaccccagaccttgtatatattatgcattatccctaccaactgag 16628075  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 43753191 - 43753220
Alignment:
Q  265 tatacattgtcccaatcaactgagttaagc 294  Q
    ||||||||||||||||||||||||||||||    
T  43753191 tatacattgtcccaatcaactgagttaagc 43753220  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 1079685 - 1079749
Alignment:
Q  230 gtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||||||||||||||||| || | || |||| |||| |||||| ||||  |||||||||||||    
T  1079685 gtggccgagatttgaaccccggaccttgcatattttatgcattgttccaactaactgagttaagc 1079749  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 39919303 - 39919259
Alignment:
Q  232 ggccgagatttgaaccccagatcatgtatatattatacattgtcc 276  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||    
T  39919303 ggccgagatttgaaccccagaccttgcatatattattcattgtcc 39919259  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 42753432 - 42753484
Alignment:
Q  242 tgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaagc 294  Q
    |||||| |||| | |||||||||||||||||||||| | ||| ||||||||||    
T  42753432 tgaacctcagaccttgtatatattatacattgtccctaccaattgagttaagc 42753484  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 43680993 - 43681045
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaa 292  Q
    ||||||||| ||| | || |||| |||| ||||||||||||||||||||||||    
T  43680993 tttgaaccctagaccttgcatattttatgcattgtcccaatcaactgagttaa 43681045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 14049874 - 14049935
Alignment:
Q  227 gtggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgag 288  Q
    ||||||||||  ||||||||| |||| | || ||||||||| ||||||| ||||||||||||    
T  14049874 gtggtggccggaatttgaacctcagaccttgcatatattatgcattgtctcaatcaactgag 14049935  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 33824951 - 33824886
Alignment:
Q  228 tggtggccgagatttgaaccccagatcatgtatatattatacattgtcccaatcaactgagttaag 293  Q
    ||||||||||| |||||||||| || | || ||||||||| ||||||||  |||||||||| ||||    
T  33824951 tggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttatcaactgagctaag 33824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 14918303 - 14918351
Alignment:
Q  240 tttgaaccccagatcatgtatatattatacattgtcccaatcaactgag 288  Q
    ||||||||||||| | |||||||||||| ||||||||| | ||||||||    
T  14918303 tttgaaccccagaccttgtatatattatgcattgtccctaccaactgag 14918351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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