View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_29 (Length: 282)
Name: NF17248_low_29
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 34787652 - 34787930
Alignment:
| Q |
2 |
gaaatgaaaggaattcgaggatttaattcggcgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttaca |
101 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787652 |
gaaacgaaaggaattcgaggatttaattcggcgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttaca |
34787751 |
T |
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| Q |
102 |
cgtgcacgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctcaagttgagatgaagaataagtttatta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787752 |
cgtgcacgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctcaagttgagatgaagaataagtttatta |
34787851 |
T |
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| Q |
202 |
atcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatat |
280 |
Q |
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| T |
34787852 |
atcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatat |
34787930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 2293545 - 2293267
Alignment:
| Q |
2 |
gaaatgaaaggaattcgaggatttaattcggcgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttaca |
101 |
Q |
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|||| |||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2293545 |
gaaaagaaaggaattcgaggatttaatccggagagttcggtggaatgtcagtgtttggattaagtatgcacagtgggaagagtcgcagaaagattttaca |
2293446 |
T |
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| Q |
102 |
cgtgcacgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctcaagttgagatgaagaataagtttatta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2293445 |
cgtgcacgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctgaagttgagatgaagaataagtttatta |
2293346 |
T |
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| Q |
202 |
atcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatat |
280 |
Q |
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| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |
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| T |
2293345 |
accatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatattcatat |
2293267 |
T |
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