View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17248_low_3 (Length: 639)

Name: NF17248_low_3
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17248_low_3
NF17248_low_3
[»] chr5 (7 HSPs)
chr5 (18-288)||(4287297-4287567)
chr5 (330-554)||(8123455-8123679)
chr5 (330-543)||(671389-671602)
chr5 (426-554)||(41709523-41709651)
chr5 (403-553)||(24108697-24108848)
chr5 (580-626)||(4287571-4287617)
chr5 (473-553)||(10321869-10321949)
[»] chr7 (10 HSPs)
chr7 (330-553)||(42513062-42513285)
chr7 (403-553)||(30456307-30456456)
chr7 (330-477)||(38572287-38572434)
chr7 (403-553)||(30452702-30452847)
chr7 (431-543)||(11206499-11206611)
chr7 (374-554)||(41712265-41712443)
chr7 (378-542)||(49017102-49017266)
chr7 (102-186)||(19990230-19990314)
chr7 (429-543)||(6102928-6103043)
chr7 (291-324)||(38572462-38572495)
[»] chr3 (10 HSPs)
chr3 (353-553)||(36326442-36326640)
chr3 (330-492)||(30911982-30912144)
chr3 (332-504)||(55211737-55211905)
chr3 (457-543)||(14029381-14029467)
chr3 (330-484)||(32414663-32414821)
chr3 (417-506)||(33328218-33328306)
chr3 (514-553)||(30912146-30912185)
chr3 (497-539)||(32414847-32414889)
chr3 (291-324)||(30911921-30911954)
chr3 (289-325)||(55211934-55211970)
[»] chr6 (7 HSPs)
chr6 (330-555)||(4834644-4834871)
chr6 (330-553)||(7415566-7415789)
chr6 (346-553)||(7422590-7422797)
chr6 (333-553)||(7426516-7426736)
chr6 (330-553)||(33242776-33242998)
chr6 (451-553)||(13886589-13886691)
chr6 (330-400)||(13886515-13886585)
[»] chr1 (6 HSPs)
chr1 (330-553)||(18583886-18584109)
chr1 (403-553)||(23405475-23405625)
chr1 (463-553)||(21075941-21076031)
chr1 (330-393)||(13087634-13087696)
chr1 (463-543)||(9893803-9893883)
chr1 (426-543)||(13087701-13087817)
[»] chr8 (2 HSPs)
chr8 (412-553)||(44761976-44762117)
chr8 (412-553)||(44765283-44765424)
[»] chr4 (8 HSPs)
chr4 (403-553)||(27387620-27387770)
chr4 (421-553)||(55322334-55322467)
chr4 (330-443)||(20441029-20441141)
chr4 (412-553)||(36050673-36050813)
chr4 (412-553)||(36053932-36054072)
chr4 (429-543)||(24733642-24733756)
chr4 (291-326)||(36050519-36050554)
chr4 (291-326)||(36053778-36053813)
[»] chr2 (5 HSPs)
chr2 (330-445)||(31211616-31211731)
chr2 (449-553)||(31211859-31211963)
chr2 (403-537)||(45327420-45327554)
chr2 (470-543)||(31193244-31193317)
chr2 (516-553)||(40400909-40400946)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 4287297 - 4287567
Alignment:
Q  18 tttatacactttcaatctatcttgcagttgctaaaaggtgatcctttttaaaggttctgtgttatgacgcaagatatatacttgatcatttgtgttgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4287297 tttatacactttcaatctatcttgcagttgctaaaaggtgatcctttttaaaggttctgtgttatgacgcaagatatatacttgatcatttgtgttgaaa 4287396  T
Q  118 tgaactagctcactcactccatctttagcgaggtctctaagaaaatgaaatctcaaatctatatgtttaacgattaaattgttttccggaaatatttgga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4287397 tgaactagctcactcactccatctttagcgaggtctctaagaaaatgaaatctcaaatctatatgtttaacgattgaattgttttccggaaatatttgga 4287496  T
Q  218 gaagattagtttctacattgttaaagataatagaaaaagagagtaacaatattttttacttaactactact 288  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4287497 gaagaatagtttctacattgttaaagataatagaaaaagagagtaacaatattttttacttaactactact 4287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 330 - 554
Target Start/End: Original strand, 8123455 - 8123679
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    |||||| |||||| |||||||||||||||||| | | |||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  8123455 atgactgaccttaatctagaaggatctagaagatctattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtc 8123554  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgat 529  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| | ||||| ||||||||    
T  8123555 tatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctttaatttctccctctaatttctgaagtgtgat 8123654  T
Q  530 ccctactcgaattgaatcgtatcaa 554  Q
    || |||||||||||  |||||||||    
T  8123655 ccatactcgaattgggtcgtatcaa 8123679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 330 - 543
Target Start/End: Original strand, 671389 - 671602
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||||||| |||||||||||| | ||| ||| |||||||||||| |||||||||| ||| |||| ||||||| |||||||||||||||||||||     
T  671389 atgactcaccttaatctagaaggatccataagatatattgttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtt 671488  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctag-tttctccctctgaattctggagtgtga 528  Q
    ||||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||| || ||||||| |||||| || | | ||||| |||||||    
T  671489 tatataatcattgtatgccttattatgagaattaatgaaaaatataatgaattttctttcttttatctctagctttctctct-taatttctgaagtgtga 671587  T
Q  529 tccctactcgaattg 543  Q
    |||| ||||||||||    
T  671588 tcccaactcgaattg 671602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 426 - 554
Target Start/End: Original strand, 41709523 - 41709651
Alignment:
Q  426 agtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtg 525  Q
    ||||||||||| |||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctctaaattctggagtg 41709622  T
Q  526 tgatccctactcgaattgaatcgtatcaa 554  Q
    ||||| ||||||||||||  |||||||||    
T  41709623 tgatctctactcgaattgggtcgtatcaa 41709651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 403 - 553
Target Start/End: Original strand, 24108697 - 24108848
Alignment:
Q  403 ttatgttattatgagtatgca-caagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctag 501  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||| || ||||  |||||| |||||||||||||| ||||   || |||||||    
T  24108697 ttattttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgtttgtctctag 24108796  T
Q  502 -tttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
     ||||| ||| | | ||||||||||||||||||||||||||||  ||||||||    
T  24108797 ttttcttcct-taatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 580 - 626
Target Start/End: Original strand, 4287571 - 4287617
Alignment:
Q  580 cttgctccctaaaactatattcttctgttttgtcatctctctgtgct 626  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4287571 cttgctccctaaaactaaattcttctgttttgtcatctctctgtgct 4287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 473 - 553
Target Start/End: Complemental strand, 10321949 - 10321869
Alignment:
Q  473 ataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    ||||||||||| ||||||||| ||||||| || || |||| |||| ||||||||||||||||||| |||||  ||||||||    
T  10321949 ataatgaatttcctttctcttatctctagcttatctctctaaattatggagtgtgatccctactcaaattgggtcgtatca 10321869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 330 - 553
Target Start/End: Complemental strand, 42513285 - 42513062
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  42513285 atgactcaccttaatctagaaggatctagaaggtctattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtc 42513186  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgat 529  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  42513185 tatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaatttctggagtgtgat 42513086  T
Q  530 ccctactcgaattgaatcgtatca 553  Q
    ||||||||||||||  ||||||||    
T  42513085 ccctactcgaattgggtcgtatca 42513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 403 - 553
Target Start/End: Original strand, 30456307 - 30456456
Alignment:
Q  403 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 502  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||  |||| || |||| ||||||| |||||||||||||||||||||||||||||||||    
T  30456307 ttatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30456405  T
Q  503 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  30456406 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30456456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 330 - 477
Target Start/End: Complemental strand, 38572434 - 38572287
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||| ||||||||| ||||| ||||||    
T  38572434 atgactcaccttaatctaaaaggatctagaaggtatcttgttaggggataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtc 38572335  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataat 477  Q
    ||||||| |||||||||  ||||||||||||| ||| || ||||||||    
T  38572334 tatataaacattgtatgccttattatgagaattaataaaaaatataat 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 403 - 553
Target Start/End: Original strand, 30452702 - 30452847
Alignment:
Q  403 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 502  Q
    |||| |||||||||||||||| |||||||||||    |||||||  |||| || |||| ||||||| |||||||||||||||||||||||||||||||||    
T  30452702 ttatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30452796  T
Q  503 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  30452797 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 431 - 543
Target Start/End: Original strand, 11206499 - 11206611
Alignment:
Q  431 atataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatc 530  Q
    |||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatc 11206598  T
Q  531 cctactcgaattg 543  Q
     ||||||||||||    
T  11206599 tctactcgaattg 11206611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 554
Target Start/End: Original strand, 41712265 - 41712443
Alignment:
Q  374 gggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataata 473  Q
    ||||| ||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||  || |    
T  41712265 gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatga--aaaa 41712362  T
Q  474 taatgaattttctttctcttttctctagtttctccctctgaa-ttctggagtgtgatccctactcgaattgaatcgtatcaa 554  Q
    |||  ||||| |||||| || |||||||||| || |||| || || ||||||||||||| |||||||||||  |||||||||    
T  41712363 taacaaatttcctttcttttgtctctagttt-tctctcttaatttttggagtgtgatccttactcgaattgggtcgtatcaa 41712443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 378 - 542
Target Start/End: Original strand, 49017102 - 49017266
Alignment:
Q  378 tgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataat 477  Q
    ||||||||||||||||  | ||||||||| ||||||||| ||| ||||||| | |||||||||||||||  ||||||||||| | |||||| ||||||||    
T  49017102 tgatattgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataat 49017201  T
Q  478 gaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaatt 542  Q
      ||||||||||| || ||||||||||||| |||| | || |||||||||||||||| |||||||    
T  49017202 atattttctttcttttatctctagtttctctctctaatttatggagtgtgatccctattcgaatt 49017266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 19990230 - 19990314
Alignment:
Q  102 atcatttgtgttgaaatgaactagctcactcactccatctttagcgaggtctctaagaaaatgaaatctcaaatctatatgttta 186  Q
    ||||||||| ||| |||||||||| ||| ||| ||||||||||  |||||| ||||||||||||||||||||||| |||||||||    
T  19990230 atcatttgttttgtaatgaactagatcaatcattccatctttaatgaggtcactaagaaaatgaaatctcaaatcaatatgttta 19990314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 429 - 543
Target Start/End: Original strand, 6102928 - 6103043
Alignment:
Q  429 ctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttcttt-ctcttttctctagtttctccctctgaa-ttctggagtgt 526  Q
    ||||||||||||||||| ||| || || ||||| |||||| ||||||||||||||| ||| || || |||||||||| || |||| || || ||||||||    
T  6102928 ctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaattttttttgcttttatctctagttt-tctctcttaatttatggagtgt 6103026  T
Q  527 gatccctactcgaattg 543  Q
    ||| |||||||||||||    
T  6103027 gattcctactcgaattg 6103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 38572495 - 38572462
Alignment:
Q  291 tgataggatatttagaataatgagtactaatgtg 324  Q
    |||||| |||||||||||||||||||||||||||    
T  38572495 tgatagtatatttagaataatgagtactaatgtg 38572462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 353 - 553
Target Start/End: Original strand, 36326442 - 36326640
Alignment:
Q  353 atctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttat 452  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||    
T  36326442 atctagaaggtatcttgttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttat 36326539  T
Q  453 tatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatc 552  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  36326540 tatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 36326639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 330 - 492
Target Start/End: Original strand, 30911982 - 30912144
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  30911982 atgactcaccttaatctagaaggatctaaaatatatcttgttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtc 30912081  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctct 492  Q
    |||||||| ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||    
T  30912082 tatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctct 30912144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 332 - 504
Target Start/End: Complemental strand, 55211905 - 55211737
Alignment:
Q  332 gactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtcta 431  Q
    |||||| |||| |||| ||||||| | ||||||| ||| |||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  55211905 gactcatcttaatctaaaaggatccataaggtatattggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtcta 55211806  T
Q  432 tataagcattgtatgttttattatgagaatgaatgaataatataatgaattt-tctttctcttttctctagttt 504  Q
    |||     |||||||  ||||||||||||| |||||| |||||||||||||| | | |||||| ||||||||||    
T  55211805 tat-----ttgtatgccttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttt 55211737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 543
Target Start/End: Original strand, 14029381 - 14029467
Alignment:
Q  457 agaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattg 543  Q
    ||||| |||||| |||||||||||||| |||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  14029381 agaatcaatgaaaaatataatgaatttcctttcttttatctctagtttctcactctaaattctggagtgtgatccctactcgaattg 14029467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 484
Target Start/End: Original strand, 32414663 - 32414821
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgc----aca 425  Q
    |||||||||||||  ||| ||||||||||||||||| ||||  |||||| ||||| ||||||||  ||||||||||| ||||| ||||| |||    |||    
T  32414663 atgactcaccttaacctataaggatctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaaaca 32414762  T
Q  426 agtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatttt 484  Q
    ||||||||||| |||||||||  |||||| |||||| ||| || |||||||||| ||||    
T  32414763 agtctatataaacattgtatgccttattacgagaatcaataaaaaatataatgattttt 32414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 33328218 - 33328306
Alignment:
Q  417 gtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttct 506  Q
    ||||||| |||||| ||||||||||||||| ||||| || ||||  ||||||  ||||||| ||||| |||||| |||||| ||||||||    
T  33328218 gtatgcataagtctgtataagcattgtatgctttataattagaaccaatgaaagatataatcaatttcctttcttttttct-tagtttct 33328306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 553
Target Start/End: Original strand, 30912146 - 30912185
Alignment:
Q  514 aattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  30912146 aattctggagtgtgatccgtactcgaattgagtcgtatca 30912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 539
Target Start/End: Original strand, 32414847 - 32414889
Alignment:
Q  497 tctagtttctccctctgaattctggagtgtgatccctactcga 539  Q
    ||||||||||| |||| |||| |||||||||||||||||||||    
T  32414847 tctagtttctctctctaaattttggagtgtgatccctactcga 32414889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 30911921 - 30911954
Alignment:
Q  291 tgataggatatttagaataatgagtactaatgtg 324  Q
    |||||||||| |||||||||||||||||||||||    
T  30911921 tgataggatacttagaataatgagtactaatgtg 30911954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 55211970 - 55211934
Alignment:
Q  289 actgataggatatttagaataatgagtactaatgtgg 325  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  55211970 actgataggatatttagaataaggagcactaatgtgg 55211934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 330 - 555
Target Start/End: Original strand, 4834644 - 4834871
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaagg--tatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaag 427  Q
    ||||||||||||| |||||||||||||| ||||  |||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||    
T  4834644 atgactcaccttaatctagaaggatctaaaaggagtatcttattaggggataatattgagtatgttagggtgcacttatcttattatgagtatgcataag 4834743  T
Q  428 tctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtg 527  Q
    |||||||||||||||||||  | ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4834744 tctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtg 4834843  T
Q  528 atccctactcgaattgaatcgtatcaac 555  Q
    |||||||||| |||||  ||||||||||    
T  4834844 atccctactcaaattgggtcgtatcaac 4834871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 330 - 553
Target Start/End: Original strand, 7415566 - 7415789
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    |||||||| |||| | |||||||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||  || |||||    
T  7415566 atgactcatcttaatttagaaggatctagaaattatcttgttaggggataatattgagtatgttatggtgcacttatcttattatgagtacacataagtc 7415665  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgat 529  Q
    |||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  7415666 tatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctctaatttctggagtgtgat 7415765  T
Q  530 ccctactcgaattgaatcgtatca 553  Q
    |||||||| | ||| |||||||||    
T  7415766 ccctactcaagttggatcgtatca 7415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 346 - 553
Target Start/End: Original strand, 7422590 - 7422797
Alignment:
Q  346 tagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtat 445  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||  ||||||||||| |||||| |||||  || |||||||||||||||||||||    
T  7422590 tagaaggatctagaagttatcttgttaggggataacattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtat 7422689  T
Q  446 gttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaa 545  Q
    |  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||      
T  7422690 gccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattggg 7422789  T
Q  546 tcgtatca 553  Q
    ||||||||    
T  7422790 tcgtatca 7422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 333 - 553
Target Start/End: Original strand, 7426516 - 7426736
Alignment:
Q  333 actcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctat 432  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||| |||||| |||||  || ||||||||    
T  7426516 actcatcttaatctagtaggatctagaagttatcttgttaggggataatattgagtatgttatggtgcacttatcttattaagagtacacataagtctat 7426615  T
Q  433 ataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccc 532  Q
    |||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||  ||| | |||||||||||||||||    
T  7426616 ataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctaatttctctttctaatttctggagtgtgatccc 7426715  T
Q  533 tactcgaattgaatcgtatca 553  Q
    |||||||||||  ||||||||    
T  7426716 tactcgaattgggtcgtatca 7426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 330 - 553
Target Start/End: Original strand, 33242776 - 33242998
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    |||| ||| ||||||||| |||||| ||||||  || |||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  33242776 atgagtcatcttagtctataaggatttagaagacatattgttaggggataatattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtc 33242874  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgat 529  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||||||||||||  ||||| || | ||||||||||| |||| | ||||||||||||||    
T  33242875 tatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatttcttttcttttatttctagtttctctctctaatttctggagtgtgat 33242974  T
Q  530 ccctactcgaattgaatcgtatca 553  Q
    | ||||||||||||  ||||||||    
T  33242975 ctctactcgaattgggtcgtatca 33242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 451 - 553
Target Start/End: Original strand, 13886589 - 13886691
Alignment:
Q  451 attatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgta 550  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||    
T  13886589 attattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgta 13886688  T
Q  551 tca 553  Q
    |||    
T  13886689 tca 13886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 13886515 - 13886585
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgc 400  Q
    ||||||||||||| ||||||| |||||| ||||||| |||||| ||| | ||||| |||||||| ||||||    
T  13886515 atgactcaccttaatctagaaagatctaaaaggtatattgttaaggggtaatattaagtatgttagggtgc 13886585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 330 - 553
Target Start/End: Complemental strand, 18584109 - 18583886
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||||||| |||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||||| ||||  |||||| ||||||||||||||    
T  18584109 atgactcaccttaatctagaaggatctaaaaggtatattattaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtc 18584010  T
Q  430 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaa-ttctggagtgtga 528  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||| |||||| || |||||||||| || |||| || ||||||||||| |    
T  18584009 tatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtaa 18583911  T
Q  529 tccctactcgaattgaatcgtatca 553  Q
    || ||||||||||||  ||||||||    
T  18583910 tctctactcgaattgggtcgtatca 18583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 403 - 553
Target Start/End: Complemental strand, 23405625 - 23405475
Alignment:
Q  403 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 502  Q
    |||| ||| |||| |||||||||||||||| ||| |||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  23405625 ttatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagt 23405526  T
Q  503 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    |||||||||| ||||||||||||||||||||||| ||||||  ||||||||    
T  23405525 ttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 463 - 553
Target Start/End: Complemental strand, 21076031 - 21075941
Alignment:
Q  463 aatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    |||||| |||||| ||||||| |||||| || ||| ||||||||| | || ||||||||||||| |||||||||||||||  |||||||||    
T  21076031 aatgaaaaatatagtgaatttcctttcttttatctgtagtttctctcgctaaattctggagtgtcatccctactcgaatttgatcgtatca 21075941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 13087634 - 13087696
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgtt 393  Q
    ||||||||||||| |||||| | ||||||||||||| |||||||||||| |||| |||||||||    
T  13087634 atgactcaccttaatctagacg-atctagaaggtatattgttaggggataatatcgagtatgtt 13087696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 543
Target Start/End: Original strand, 9893803 - 9893883
Alignment:
Q  463 aatgaataatataatgaattttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattg 543  Q
    |||||| ||||||||||||||||||||| |  ||||||||||||  | || |||| || |||||||| ||||||| |||||    
T  9893803 aatgaaaaatataatgaattttctttctttcatctctagtttctttcactaaattatgcagtgtgatacctactcaaattg 9893883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 543
Target Start/End: Original strand, 13087701 - 13087817
Alignment:
Q  426 agtctatataagcattgtatgttttattatgagaatgaatg-aataatataatgaattttctttctcttttctctagtttctccctctgaattctggagt 524  Q
    |||||||||||| ||||||||  |||||||||||||||||| || |||| |||||||||  ||||| || ||| ||    ||| |||  |||||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaaaaaatacaatgaatttattttcttttatcttta--acctctctcgaaattctggagt 13087798  T
Q  525 gtgatccctactcgaattg 543  Q
    ||||| |||| ||||||||    
T  13087799 gtgatacctattcgaattg 13087817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 412 - 553
Target Start/End: Original strand, 44761976 - 44762117
Alignment:
Q  412 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 511  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||| ||| |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  44761976 tatgtgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttctccctc 44762075  T
Q  512 tgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    | ||||||||||||||||||||||||||||||  ||||||||    
T  44762076 taaattctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 412 - 553
Target Start/End: Original strand, 44765283 - 44765424
Alignment:
Q  412 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 511  Q
    |||| |||||||||||||||||||| ||||||||   ||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44765283 tatgtgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctc 44765382  T
Q  512 tgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    | ||||||||||||| ||||||||||||||||  ||||||||    
T  44765383 taaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 403 - 553
Target Start/End: Original strand, 27387620 - 27387770
Alignment:
Q  403 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 502  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||  | ||||| || | ||||||| ||||||||||||||  ||||  |  ||||||||    
T  27387620 ttatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaatttcttttccttcatctctagt 27387719  T
Q  503 ttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  27387720 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 421 - 553
Target Start/End: Complemental strand, 55322467 - 55322334
Alignment:
Q  421 gcacaagtctatataagcattgtatgttttattatgagaatgaatgaataata-taatgaattttctttctcttttctctagtttctccctctgaattct 519  Q
    ||||||||||||||||||||||||||  | ||||| || ||||||||| |||| |||||||||| |||||| || ||||||| |||| | ||| ||||||    
T  55322467 gcacaagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttcttttatctctagcttctacttctaaattct 55322368  T
Q  520 ggagtgtgatccctactcgaattgaatcgtatca 553  Q
    ||||||||||||||||||||||||  ||||||||    
T  55322367 ggagtgtgatccctactcgaattgggtcgtatca 55322334  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 330 - 443
Target Start/End: Complemental strand, 20441141 - 20441029
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||||||| | |||||| ||||| || |||| |||||| ||||| |||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  20441141 atgactcaccttaatttagaag-atctaaaaagtatattgttaagggataatattgagcatgtcagggtgcacttatcttattatgagtatgcacaagtc 20441043  T
Q  430 tatataagcattgt 443  Q
    | || |||||||||    
T  20441042 tgtacaagcattgt 20441029  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 412 - 553
Target Start/End: Original strand, 36050673 - 36050813
Alignment:
Q  412 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 511  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||||    |||||| ||||||||||||||  ||||| || |||||||||| || ||     
T  36050673 tatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttttcttttatctctagttt-tctctt 36050770  T
Q  512 tgaa-ttctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    | || || |||||||||||||||||||||||||  ||||||||    
T  36050771 ttaatttttggagtgtgatccctactcgaattgggtcgtatca 36050813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 412 - 553
Target Start/End: Original strand, 36053932 - 36054072
Alignment:
Q  412 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctc 511  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||||    |||||| ||||||||||||||  ||||| || |||||||||| || ||     
T  36053932 tatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttttcttttatctctagttt-tctctt 36054029  T
Q  512 tgaa-ttctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    | || || |||||||||||||||||||||||||  ||||||||    
T  36054030 ttaatttttggagtgtgatccctactcgaattgggtcgtatca 36054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 543
Target Start/End: Original strand, 24733642 - 24733756
Alignment:
Q  429 ctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaat-tctggagtgtg 527  Q
    ||||||||||||||||||||| || || |||| ||||||| |||||||||||||| |||||| || | |||||||| || |||| ||| |||  ||||||    
T  24733642 ctatataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttcttttatatctagttt-tctctcttaatatctaaagtgtg 24733740  T
Q  528 atccctactcgaattg 543  Q
    ||||||||| ||||||    
T  24733741 atccctacttgaattg 24733756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 36050519 - 36050554
Alignment:
Q  291 tgataggatatttagaataatgagtactaatgtggt 326  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggt 36050554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 36053778 - 36053813
Alignment:
Q  291 tgataggatatttagaataatgagtactaatgtggt 326  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggt 36053813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 330 - 445
Target Start/End: Original strand, 31211616 - 31211731
Alignment:
Q  330 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 429  Q
    ||||||||| ||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||| | |||||||||| ||| |||||||||||| |||||    
T  31211616 atgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcacttatcttaatatgagtatgcataagtc 31211715  T
Q  430 tatataagcattgtat 445  Q
    |||||||| |||||||    
T  31211716 tatataagtattgtat 31211731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 553
Target Start/End: Original strand, 31211859 - 31211963
Alignment:
Q  449 ttattatgagaatgaatgaataatataatgaattttctttctcttttctctagtttctccctctgaa-ttctggagtgtgatccctactcgaattgaatc 547  Q
    ||||||||||||| |||||| ||||||||||||||||||||| || |||||||||| || |||| || |||||||||||||||||||||||||||| |||    
T  31211859 ttattatgagaatcaatgaaaaatataatgaattttctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattggatc 31211957  T
Q  548 gtatca 553  Q
    ||||||    
T  31211958 gtatca 31211963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 403 - 537
Target Start/End: Complemental strand, 45327554 - 45327420
Alignment:
Q  403 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttctcttttctctagt 502  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||||||| |||||  ||||| || |||||| |    
T  45327554 ttatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttcttttatctctaat 45327455  T
Q  503 ttctccctctgaa-ttctggagtgtgatccctactc 537  Q
    || || |||| || ||||||||||||||||||||||    
T  45327454 tt-tctctcttaatttctggagtgtgatccctactc 45327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 543
Target Start/End: Original strand, 31193244 - 31193317
Alignment:
Q  470 aatataatgaattttctttctcttttctctagtttctccctctgaatt-ctggagtgtgatccctactcgaattg 543  Q
    |||||||| |||||||||||| |  |||||||||| || |||| |||| || |||||||||||||||||||||||    
T  31193244 aatataataaattttctttctttcatctctagttt-tctctcttaatttctagagtgtgatccctactcgaattg 31193317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 40400946 - 40400909
Alignment:
Q  516 ttctggagtgtgatccctactcgaattgaatcgtatca 553  Q
    ||||||||||||||||||||||||||||| || |||||    
T  40400946 ttctggagtgtgatccctactcgaattgagtcatatca 40400909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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