View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17248_low_31 (Length: 267)

Name: NF17248_low_31
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17248_low_31
NF17248_low_31
[»] chr7 (15 HSPs)
chr7 (180-249)||(23771167-23771236)
chr7 (179-249)||(46421479-46421549)
chr7 (180-249)||(9672186-9672255)
chr7 (177-249)||(32664129-32664201)
chr7 (181-249)||(27306778-27306846)
chr7 (181-247)||(26174400-26174466)
chr7 (178-249)||(1535711-1535782)
chr7 (179-246)||(7918128-7918195)
chr7 (179-246)||(23361065-23361132)
chr7 (180-242)||(19762553-19762615)
chr7 (180-242)||(18333673-18333735)
chr7 (180-249)||(10668484-10668553)
chr7 (180-229)||(41200347-41200396)
chr7 (180-242)||(38701965-38702027)
chr7 (178-211)||(18496181-18496214)
[»] chr2 (12 HSPs)
chr2 (180-249)||(1698715-1698784)
chr2 (180-249)||(33056201-33056270)
chr2 (180-246)||(7093772-7093838)
chr2 (180-249)||(17899406-17899475)
chr2 (180-246)||(11880190-11880256)
chr2 (180-246)||(37363227-37363293)
chr2 (180-249)||(39820146-39820215)
chr2 (174-249)||(18165896-18165971)
chr2 (180-242)||(5009524-5009586)
chr2 (180-242)||(35601401-35601463)
chr2 (180-242)||(40657163-40657225)
chr2 (181-241)||(1590417-1590477)
[»] chr6 (10 HSPs)
chr6 (179-249)||(17307301-17307371)
chr6 (179-249)||(13336776-13336846)
chr6 (179-249)||(28904365-28904435)
chr6 (179-246)||(21739298-21739365)
chr6 (180-249)||(20107714-20107783)
chr6 (179-228)||(31521835-31521884)
chr6 (180-242)||(4442741-4442803)
chr6 (180-242)||(13527692-13527754)
chr6 (180-242)||(28695449-28695511)
chr6 (180-240)||(4970459-4970519)
[»] chr5 (4 HSPs)
chr5 (179-247)||(36394829-36394897)
chr5 (179-249)||(2062101-2062171)
chr5 (180-242)||(37566554-37566616)
chr5 (180-242)||(33871774-33871836)
[»] chr3 (16 HSPs)
chr3 (179-249)||(23705992-23706062)
chr3 (179-249)||(23724448-23724518)
chr3 (179-249)||(23742904-23742974)
chr3 (178-249)||(18553059-18553130)
chr3 (103-172)||(14333776-14333845)
chr3 (180-249)||(15858913-15858982)
chr3 (103-172)||(14329817-14329886)
chr3 (180-247)||(20858954-20859021)
chr3 (180-242)||(26250138-26250200)
chr3 (180-249)||(47167462-47167531)
chr3 (180-249)||(29723142-29723212)
chr3 (177-246)||(32928172-32928242)
chr3 (180-242)||(33900729-33900791)
chr3 (180-249)||(6580777-6580846)
chr3 (103-172)||(14324078-14324147)
chr3 (177-221)||(46831865-46831909)
[»] scaffold1371 (1 HSPs)
scaffold1371 (180-249)||(79-148)
[»] scaffold0573 (1 HSPs)
scaffold0573 (179-249)||(5365-5435)
[»] chr8 (7 HSPs)
chr8 (179-249)||(17906066-17906136)
chr8 (180-247)||(35067431-35067498)
chr8 (180-246)||(9765183-9765249)
chr8 (180-249)||(31323620-31323689)
chr8 (180-249)||(44464244-44464313)
chr8 (180-249)||(44471775-44471844)
chr8 (177-215)||(3540841-3540879)
[»] chr4 (12 HSPs)
chr4 (179-249)||(5324477-5324547)
chr4 (180-246)||(20359625-20359691)
chr4 (180-249)||(37746759-37746828)
chr4 (179-249)||(16606841-16606911)
chr4 (182-242)||(16922635-16922695)
chr4 (183-249)||(34342815-34342881)
chr4 (180-242)||(38965050-38965112)
chr4 (180-249)||(5165978-5166047)
chr4 (180-242)||(32216684-32216746)
chr4 (172-249)||(46042603-46042680)
chr4 (183-247)||(10319042-10319106)
chr4 (181-249)||(25353728-25353796)
[»] scaffold0122 (1 HSPs)
scaffold0122 (180-249)||(45045-45114)
[»] scaffold0164 (1 HSPs)
scaffold0164 (178-242)||(1049-1113)
[»] scaffold0669 (1 HSPs)
scaffold0669 (180-242)||(5267-5329)
[»] chr1 (5 HSPs)
chr1 (172-242)||(20337135-20337205)
chr1 (180-242)||(2397666-2397728)
chr1 (181-238)||(45876651-45876708)
chr1 (181-247)||(26979750-26979816)
chr1 (181-242)||(1859548-1859608)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 23771236 - 23771167
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771236 cactacaagaaacattaccttttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 23771167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 46421549 - 46421479
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  46421549 acactacaagaaacgttaccttttgccaggggaaaaacccttgtcaaaaggacagaatccctgggaaaagg 46421479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 9672255 - 9672186
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||||||||| || || ||||||| |||||||||||||||||||    
T  9672255 cactacaagaaacattaccttttgccaggggcaaaatccctgacaaaaggacagaatccctgggaaaagg 9672186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 32664201 - 32664129
Alignment:
Q  177 atacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||  |||||| |||||||||||||||||||    
T  32664201 atacactacaagaaacattaccttttgtcaggggcaaaatccttgagaaaaggacagaatccctgggaaaagg 32664129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 27306778 - 27306846
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||| ||||||||||||||||| || ||  |||||| |||||||||||||||||||    
T  27306778 actacaagaaacattaccttttgccaggggcaaaatccctgagaaaaggacagaatccctgggaaaagg 27306846  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 26174466 - 26174400
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaa 247  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||||||| || ||||||||||||||    
T  26174466 actacaagaaacattaccttttgttaggggcaaatcccttgtcaaaaggacaaaatccctgggaaaa 26174400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 1535782 - 1535711
Alignment:
Q  178 tacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||||||||||| || ||  |||| | |||||||||| ||||||||    
T  1535782 tacactacaagaaacattgcattttgccaggggcaaaatccctgagaaaatgacagaatccctaggaaaagg 1535711  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 7918195 - 7918128
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    ||||||||||||||||||| |||||  |||||||||| || |||||||||| || |||||||||||||    
T  7918195 acactacaagaaacattaccttttgttaggggcaaaatccctgtcaaaaggacacaatccctgggaaa 7918128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 23361065 - 23361132
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    |||||| |||||||||||| ||||||||||||||||| || |||||||||| || | |||||||||||    
T  23361065 acactataagaaacattaccttttgccaggggcaaaatccatgtcaaaaggacaaactccctgggaaa 23361132  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 19762553 - 19762615
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||||| |||||||||||||||||  | |||||||||| || |||||||||    
T  19762553 cactacaagaaacattaccttttgccaggggcaaaatacctgtcaaaaggacaaaatccctgg 19762615  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 18333673 - 18333735
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||| | | ||||||||||||||||| || |||||||||| || |||||||||    
T  18333673 cactacaagaaacactgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 18333735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 10668553 - 10668484
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||| ||||| ||||| || ||  |||||| || ||||||||||||||||    
T  10668553 cactacaagaaacattaccttttgtcagggacaaaatccctgagaaaaggacaaaatccctgggaaaagg 10668484  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 41200347 - 41200396
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaagg 229  Q
    |||||||||||||||||| ||||||||||||||||| || || |||||||    
T  41200347 cactacaagaaacattaccttttgccaggggcaaaatccctggcaaaagg 41200396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 38701965 - 38702027
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||||||||||||||| || |||||||||| || || ||||||    
T  38701965 cactacaaggaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaagccctgg 38702027  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 18496181 - 18496214
Alignment:
Q  178 tacactacaagaaacattacattttgccaggggc 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  18496181 tacactacaagaaacattacactttgccaggggc 18496214  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 1698784 - 1698715
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1698784 cactacaagaaacattgcattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 1698715  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 33056201 - 33056270
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33056201 cactacaagaaacattaccttttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 33056270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 7093772 - 7093838
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||    
T  7093772 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggtcaaaatccctgggaaa 7093838  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 17899406 - 17899475
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  17899406 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 17899475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 11880190 - 11880256
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| || |||||||||||||    
T  11880190 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacataatccctgggaaa 11880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 37363227 - 37363293
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| || |||||||||||||    
T  37363227 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacataatccctgggaaa 37363293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 39820146 - 39820215
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||| ||||| ||||||||||||| || ||  |||| | |||||||||||||||||||    
T  39820146 cactacaagaaacattgcatttcgccaggggcaaaatccctgagaaaatgacagaatccctgggaaaagg 39820215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 18165971 - 18165896
Alignment:
Q  174 tatatacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||||||| |||||||| ||||||||||    ||  |||||| |||||| ||||||||||||    
T  18165971 tatatacactacaagaaacattgcattttgctaggggcaaaatttctgagaaaaggacagaattcctgggaaaagg 18165896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 5009524 - 5009586
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  5009524 cactacaaggaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 5009586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 35601463 - 35601401
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||| ||||||||||| || |||||||||| || |||||||||    
T  35601463 cactacaaggaacattgccttttgtcaggggcaaaatccctgtcaaaaggacaaaatccctgg 35601401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 40657225 - 40657163
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||| | | ||||||||||||||||| || |||||||||| || || ||||||    
T  40657225 cactacaagaaacactgccttttgccaggggcaaaatccctgtcaaaaggacaaaagccctgg 40657163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 1590477 - 1590417
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctg 241  Q
    ||||||||||||||||| |||||| ||||||||||  | ||  |||||| |||||||||||    
T  1590477 actacaagaaacattaccttttgctaggggcaaaattcctgagaaaaggacagaatccctg 1590417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 17307301 - 17307371
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  17307301 acactacaagaaacattaccttttgccaggggcaaaccccttgtcaaaaggacaaaatccctgggaaaagg 17307371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 13336776 - 13336846
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  13336776 acactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 13336846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 28904435 - 28904365
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||| |||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  28904435 acactacaggaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 28904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 21739365 - 21739298
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    ||||||||||||||||||| |||||||||||| |||| || |||||||||| || |||||||||||||    
T  21739365 acactacaagaaacattaccttttgccaggggaaaaatccctgtcaaaaggacaaaatccctgggaaa 21739298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 20107783 - 20107714
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||| ||| ||||||||||||||||| || ||  ||||||  ||||||||||||||||||    
T  20107783 cactacaagaaacactactttttgccaggggcaaaatccatgagaaaaggatagaatccctgggaaaagg 20107714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 31521884 - 31521835
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaag 228  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  31521884 acactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaag 31521835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 4442741 - 4442803
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||||||||||||||| ||||||||||||| || || ||||||    
T  4442741 cactacaaggaacattgccttttgccaggggcaaaatccttgtcaaaaggacaaaagccctgg 4442803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 13527754 - 13527692
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||||||||||||||| || |||||||||| || || ||||||    
T  13527754 cactacaaggaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaagccctgg 13527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 28695511 - 28695449
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||| |||||||| | | ||||||||||||||||| || |||||||||| || |||||||||    
T  28695511 cactataagaaacactgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 28695449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 4970519 - 4970459
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccct 240  Q
    |||||||||||||||||| ||||| |||||| |||| || |||||||| | || |||||||    
T  4970519 cactacaagaaacattaccttttgtcaggggtaaaatccctgtcaaaaagacacaatccct 4970459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 36394829 - 36394897
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaa 247  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  36394829 acactacaagaaacattaccttttgtcaggggcaaaacccttgtcaaaaggacagaatccttgggaaaa 36394897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 2062101 - 2062171
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| |||||||||||| |||| || |||||||||| |||||||||||| ||||||    
T  2062101 acactacaagaaacattaccttttgccaggggtaaaatccctgtcaaaaggacagaatccctggcaaaagg 2062171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 37566554 - 37566616
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  37566554 cactacaagaaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 37566616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 33871774 - 33871836
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||||||||||||||| || |||||||||| || || ||||||    
T  33871774 cactacaaggaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaagccctgg 33871836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 23706062 - 23705992
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  23706062 acactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 23705992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 23724518 - 23724448
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  23724518 acactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 23724448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 23742974 - 23742904
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  23742974 acactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 23742904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 18553059 - 18553130
Alignment:
Q  178 tacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||| ||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  18553059 tacactacaagaaatattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 18553130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 14333845 - 14333776
Alignment:
Q  103 tcaaaatatgttcctagtttattttacagtaacattcatatttcataaactgagttgtgttagactatca 172  Q
    |||||||||||| ||| ||| ||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  14333845 tcaaaatatgttactaattttttttacagtaaaattcatatttcatcaagtgagttgtgttagactatca 14333776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 15858982 - 15858913
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||| || ||||||||| ||||||    
T  15858982 cactacaagaaacattaccttttgccagggacaaaatccttgtcaaaaggacaaaatccctggcaaaagg 15858913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 14329886 - 14329817
Alignment:
Q  103 tcaaaatatgttcctagtttattttacagtaacattcatatttcataaactgagttgtgttagactatca 172  Q
    |||||||||||| ||| ||| ||||| ||||| ||||||||||||| || ||||||||||||||||||||    
T  14329886 tcaaaatatgttactaattttttttatagtaaaattcatatttcatcaagtgagttgtgttagactatca 14329817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 20859021 - 20858954
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaa 247  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||  || ||||||||| ||||    
T  20859021 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaagtacataatccctggcaaaa 20858954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 26250200 - 26250138
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  26250200 cactacaagaaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 26250138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 47167531 - 47167462
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| |||||||| |||||||| || ||  |||||| |||||||| ||||||||||    
T  47167531 cactacaagaaacattaccttttgccatgggcaaaatccctgagaaaaggacagaatccttgggaaaagg 47167462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 29723142 - 29723212
Alignment:
Q  180 cactacaaga-aacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||| |||||||| ||||||||||||||||  || ||  |||||| |||||||||||||||||||    
T  29723142 cactacaagagaacattaccttttgccaggggcaaactccctgagaaaaggacagaatccctgggaaaagg 29723212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 32928242 - 32928172
Alignment:
Q  177 atacactacaagaaacattacatttt-gccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    ||||||||||||||||||||| |||| |||||||| |||| || ||||||||||  | |||||||||||||    
T  32928242 atacactacaagaaacattacctttttgccaggggtaaaatccctgtcaaaaggatacaatccctgggaaa 32928172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 33900729 - 33900791
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||| |||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  33900729 cactacaaggaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 33900791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 6580846 - 6580777
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||| | ||||||||| ||||||| || ||  |||||| ||||||||||| |||||||    
T  6580846 cactacaagaaacattgccttttgccagcggcaaaatccctgggaaaaggacagaatccctgagaaaagg 6580777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 14324147 - 14324078
Alignment:
Q  103 tcaaaatatgttcctagtttattttacagtaacattcatatttcataaactgagttgtgttagactatca 172  Q
    |||||||||||| ||| ||  ||||||| ||| |||||| |||||| || ||||||||||||||||||||    
T  14324147 tcaaaatatgttactaattctttttacattaaaattcatgtttcatcaagtgagttgtgttagactatca 14324078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 46831909 - 46831865
Alignment:
Q  177 atacactacaagaaacattacattttgccaggggcaaaacccttg 221  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||    
T  46831909 atacactacaagaaacattgccttttgtcaggggcaaaatccttg 46831865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1371 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1371
Description:

Target: scaffold1371; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 79 - 148
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||||||||| || || ||||||| |||||||||||||||||||    
T  79 cactacaagaaacattaccttttgccaggggcaaaatccctgacaaaaggacagaatccctgggaaaagg 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 5365 - 5435
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||| |||||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||    
T  5365 acactacaggaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 5435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 17906136 - 17906066
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| |||| |||||||||||| |||||  |||||| |||||||||||||||||||    
T  17906136 acactacaagaaacattacctttttccaggggcaaaatccttgagaaaaggacagaatccctgggaaaagg 17906066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 35067431 - 35067498
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaa 247  Q
    |||||||||||||||||| ||||||||||||||||| || ||  |||||| |||||||||||||||||    
T  35067431 cactacaagaaacattaccttttgccaggggcaaaatccctgagaaaaggacagaatccctgggaaaa 35067498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 9765249 - 9765183
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| || ||||| |||||||    
T  9765249 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacaaaatccatgggaaa 9765183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 31323620 - 31323689
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||| || |||||| |||||||||| |||||  |||| | |||||||||||||||||||    
T  31323620 cactacaagaaacatcaccttttgctaggggcaaaatccttgagaaaatgacagaatccctgggaaaagg 31323689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 44464313 - 44464244
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||| ||||||| | ||||||||||||||||| || ||  |||||| |||||||||||||||||||    
T  44464313 cactacaaaaaacattgccttttgccaggggcaaaatccctgggaaaaggacagaatccctgggaaaagg 44464244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 44471844 - 44471775
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||| ||||||| | ||||||||||||||||| || ||  |||||| |||||||||||||||||||    
T  44471844 cactacaaaaaacattgccttttgccaggggcaaaatccctgggaaaaggacagaatccctgggaaaagg 44471775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 3540879 - 3540841
Alignment:
Q  177 atacactacaagaaacattacattttgccaggggcaaaa 215  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  3540879 atacactacaagaaacattgcattttgccaggggcaaaa 3540841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 5324547 - 5324477
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| ||||| ||||||||||| || |||||||||| |||||||||||| ||||||    
T  5324547 acactacaagaaacattaccttttgtcaggggcaaaatccctgtcaaaaggacagaatccctggcaaaagg 5324477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 20359625 - 20359691
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaa 246  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| || |||||||||||||    
T  20359625 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgggaaa 20359691  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 37746828 - 37746759
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| |||| ||||| ||||||||    
T  37746828 cactacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacagagtccctaggaaaagg 37746759  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 16606841 - 16606911
Alignment:
Q  179 acactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||||||| ||||||||||||||||| || ||  |||||| ||||||||| |||||||||    
T  16606841 acactacaagaaacattaccttttgccaggggcaaaatccctgagaaaaggacagaatcccagggaaaagg 16606911  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 16922635 - 16922695
Alignment:
Q  182 ctacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| ||||||||||||||||| || |||||||||| || |||||||||    
T  16922635 ctacaagaaacattaccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 16922695  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 34342815 - 34342881
Alignment:
Q  183 tacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    ||||||||||||||| |||||||||  |||||| ||||||||||||| || ||| ||||||||||||    
T  34342815 tacaagaaacattaccttttgccagaagcaaaatccttgtcaaaaggacataattcctgggaaaagg 34342881  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 38965050 - 38965112
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  38965050 cactacaagaaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 38965112  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 5165978 - 5166047
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||| ||||||||||||||||||| || ||  |||| | ||||||||||| |||||||    
T  5165978 cactacaagaaacattgcattttgccaggggcaaaatccctgagaaaatgacagaatccctgagaaaagg 5166047  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 32216746 - 32216684
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| | ||||||||||||||||| || ||| |||||| || |||||||||    
T  32216746 cactacaagaaacattgccttttgccaggggcaaaatccctgttaaaaggacaaaatccctgg 32216684  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 46042603 - 46042680
Alignment:
Q  172 agtatatacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||| ||||||||||||| ||||| ||||||||| |||||||  | ||  |||||| ||||||||||| |||||||    
T  46042603 agtatagacactacaagaaatattaccttttgccagtggcaaaattcctgagaaaaggacagaatccctgagaaaagg 46042680  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 10319042 - 10319106
Alignment:
Q  183 tacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaa 247  Q
    ||||||||||||||| ||||  ||||||||||| || |   |||||| |||||||||||||||||    
T  10319042 tacaagaaacattaccttttatcaggggcaaaatccctaagaaaaggacagaatccctgggaaaa 10319106  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 25353728 - 25353796
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||| || ||||| ||||||||||| |  ||  |||||| ||||||| |||||||||||    
T  25353728 actacaagaaacatcaccttttgtcaggggcaaaatcactgagaaaaggacagaatctctgggaaaagg 25353796  T

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Target: scaffold0122 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 45045 - 45114
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaagg 249  Q
    |||||||||||||||||| ||||||||||||||||| || ||  |||||| |||||||||||| ||||||    
T  45045 cactacaagaaacattaccttttgccaggggcaaaatccctgaaaaaaggacagaatccctggcaaaagg 45114  T

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Target: scaffold0164 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 1113 - 1049
Alignment:
Q  178 tacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  1113 tacactacaagaaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 1049  T

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Target: scaffold0669 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 5267 - 5329
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||    
T  5267 cactacaagaaacattgccttttgccaggggcaaaatccctgtcaaaaggacaaaatccctgg 5329  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 20337135 - 20337205
Alignment:
Q  172 agtatatacactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||| ||||||||||||||||||| | ||||||||||||| ||| || |||||||||| || |||||||||    
T  20337135 agtagatacactacaagaaacattgccttttgccaggggcgaaatccctgtcaaaaggacaaaatccctgg 20337205  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 2397666 - 2397728
Alignment:
Q  180 cactacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    |||||||||||||||| | ||||||||||||||||| || | |||||||| || |||||||||    
T  2397666 cactacaagaaacattgccttttgccaggggcaaaatccctatcaaaaggacaaaatccctgg 2397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 45876651 - 45876708
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatcc 238  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||| || |||||    
T  45876651 actacaagaaacattaccttttgtcaggggcaaaatccctgtcaaaaggacacaatcc 45876708  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 26979816 - 26979750
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgggaaaa 247  Q
    ||||||||||||||||| ||||| ||||||||||| || ||  ||||||  ||||||||||| ||||    
T  26979816 actacaagaaacattaccttttgtcaggggcaaaatccctgagaaaaggatagaatccctggaaaaa 26979750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 1859548 - 1859608
Alignment:
Q  181 actacaagaaacattacattttgccaggggcaaaacccttgtcaaaaggtcagaatccctgg 242  Q
    ||||||||||||||| | |||||||| |||||||| || |||||||||| || |||||||||    
T  1859548 actacaagaaacattgccttttgcca-gggcaaaatccctgtcaaaaggacaaaatccctgg 1859608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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