View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_39 (Length: 248)
Name: NF17248_low_39
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 33315802 - 33315567
Alignment:
| Q |
4 |
ccaccaccaccacctcccaacaatgagggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaattatttgatgtga |
102 |
Q |
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| T |
33315802 |
ccaccaccaccacctcccaacaatgagggtcaaggagaacaagttcctttagatttgtcacaatcttccccgcaaacacaagagcaattatttgatgtga |
33315703 |
T |
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| Q |
103 |
acgtgcaaggaccacaaccaataggaattggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgc |
202 |
Q |
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| T |
33315702 |
atgtgcaaggaccacaaccaataggaattggacaaggaacttttgatccagcacctattggagttaggccaccacctattagggttcaaaatctaaatgc |
33315603 |
T |
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| Q |
203 |
acgtctgaatgaacaacaaatgtttacatctttcat |
238 |
Q |
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| T |
33315602 |
acgtctgaatggataacaaatgcttacatctttcat |
33315567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 38984141 - 38984372
Alignment:
| Q |
7 |
ccaccaccacctcccaacaatgagggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaattatttgatgtgaacg |
105 |
Q |
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| T |
38984141 |
ccaccaccacgtctcaacaatgcgagtcaaggaaatgaagttgctttagatttgtcacaatttgccccacaaacacaagagcaattatttgatgtgaatg |
38984240 |
T |
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| Q |
106 |
tgcaaggaccacaaccaataggaattggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgcacg |
205 |
Q |
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| T |
38984241 |
tgcaaggaccacaaccaataggaattagacagtgaacttttgatccagcaccgattggagttaggccaccacctatta-gggtcaaactccaaatgcacg |
38984339 |
T |
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| Q |
206 |
tctgaatgaacaacaaatgtttacatctttcat |
238 |
Q |
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| T |
38984340 |
tctgaatgaacaacaaatgcttacatctttcat |
38984372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 32794055 - 32794113
Alignment:
| Q |
180 |
attaggggtcaaaatccaaatgcacgtctgaatgaacaacaaatgtttacatctttcat |
238 |
Q |
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| T |
32794055 |
attaggggtcaaactccaaatgcacgtatgaatgaacaacagatatttacatctttcat |
32794113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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