View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17248_low_4 (Length: 639)
Name: NF17248_low_4
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 50472491 - 50473096
Alignment:
| Q |
18 |
ataacatgatattaagatagtaacaaaatctacggatttgtctcatctaagaatccatcctattgtttcctttggattgggttctaatcccattaacatt |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50472491 |
ataacatgatattaagatagtaacacaatctacggatttgtctcatctaagaatccatgctattgtttcctttggattgggttctaatcccattaacatt |
50472590 |
T |
|
| Q |
118 |
tctcttttaaaatagttgagattgcgggttgcaatgtcagtgggcaattacgcatgttttccactttaaatgatgcagttgtacttttttatgtgaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50472591 |
tctcttttaaaatagttgagattgcgggttgcaatgtcagtgggcaattacgcatgttttccactttaaatgatgcagttgtacttttttatgtgaaaaa |
50472690 |
T |
|
| Q |
218 |
tatatcaattcatatggctttaagatcaaaacaaaatcacaagtggttcagttgtacttaataataataaaatttataatctgtcatatatcgtctacat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50472691 |
tatatcaattcatatggctttaagatcaaaacaaaatcacaagtggttcagttgtacttaataataataaaatttatagtctgtcatatatcgtctacat |
50472790 |
T |
|
| Q |
318 |
tttctaactaacattttatccaagtttaattttgttacattgagttaataaattacattatcatttgactatatgcattttgctgtcaaattatataaag |
417 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50472791 |
tttctaactaacattttatctaagtttaattttgttacattgagttaataaattacattatcatttgaatatatgcattttgctgtcaaattatataaag |
50472890 |
T |
|
| Q |
418 |
aatgcatgtaagcacacacaactttttaacctttgagcgtaaacaaattaaactttatcctccagatcttctattatggggttcaaattaaaattttaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50472891 |
aatgcatgtaagcacacacaactttttaacctttgagcgtaaacaaattaaactttatcctccagatcttctattatggggttcaaattaaaattttaca |
50472990 |
T |
|
| Q |
518 |
tcaatcatattctaatatatagctgccagctcacatgcattcaatttctgcagctaaaaacacttgcaaacagtgaaacaagtgagaaatatgccctcgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
50472991 |
tcaatcatattctaatatatagctgccagctcacatgcattcaatttctgcagctaaaaacacttgtaaacagtgaagc--ttgagaaatatgccctcgt |
50473088 |
T |
|
| Q |
618 |
tatctgtg |
625 |
Q |
| |
|
|||||||| |
|
|
| T |
50473089 |
tatctgtg |
50473096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University