View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_45 (Length: 238)
Name: NF17248_low_45
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_45 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 11328008 - 11327788
Alignment:
| Q |
18 |
gttttgctacagttgagaaggatcttcctggagacttgacacctatgctaggttgagcactttctaggaatcaagaggaaagctggacagtcaagctcgg |
117 |
Q |
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| T |
11328008 |
gttttgctacagttgagaaggatcttgctggagacttgacacctatgctaggttgagcactttctaggaatcaagaggaaagctggacagtcaagctcgg |
11327909 |
T |
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| Q |
118 |
ataccccaaaatagaagaaatcctgattccttggtcgtgtaatattaagcatttcaaggatgcaacactactactatttcgtaacatttttccgataaca |
217 |
Q |
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| T |
11327908 |
ataccccaaaatagaagaaatcctgattccttggtcgtgtaatattaagcatttcaaggatgcaacactactactatttcgtaacattattccgataaca |
11327809 |
T |
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| Q |
218 |
gccatatgtattttactgatt |
238 |
Q |
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||||||| ||||||||||||| |
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| T |
11327808 |
gccatatatattttactgatt |
11327788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 11486029 - 11485809
Alignment:
| Q |
18 |
gttttgctacagttgagaaggatcttcctggagacttgacacctatgctaggttgagcactttctaggaatcaagaggaaagctggacagtcaagctcgg |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11486029 |
gttttgctacagttgagaaggatcttgctggagacttgacacctatgctaggttgagcactttctaggaatcaagaggaaagctggacagtcaagctcgg |
11485930 |
T |
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| Q |
118 |
ataccccaaaatagaagaaatcctgattccttggtcgtgtaatattaagcatttcaaggatgcaacactactactatttcgtaacatttttccgataaca |
217 |
Q |
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| T |
11485929 |
ataccccaaaatagaagaaatcctgattccttggtcgtgtaatattaagcatttcaaggatgcaacactactactatttcgtaacattattccgataaca |
11485830 |
T |
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| Q |
218 |
gccatatgtattttactgatt |
238 |
Q |
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||||||| ||||||||||||| |
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| T |
11485829 |
gccatatatattttactgatt |
11485809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 37371925 - 37371877
Alignment:
| Q |
18 |
gttttgctacagttgagaaggatcttcctggagacttgacacctatgct |
66 |
Q |
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| T |
37371925 |
gttttgctacagttgagaaagatcttcctggaggcttgacacctatgct |
37371877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 37371216 - 37371164
Alignment:
| Q |
67 |
aggttgagcactttctaggaatcaagaggaaagctggacagtcaagctcggat |
119 |
Q |
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| T |
37371216 |
aggttgagcactttctgggaatcaagagaaaagctgaacaatcaagctcggat |
37371164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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