View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_47 (Length: 234)
Name: NF17248_low_47
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_47 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 34787462 - 34787680
Alignment:
| Q |
16 |
gttacctcactcgaaaagacactgaagtaaaacttccacgtccaactagggttaagaacaaaacccccgctccgattcaaatcacagcggagcaaattct |
115 |
Q |
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| T |
34787462 |
gttacctcactcgaaaagacactgaagtaaaacttccacgtccaactagggttaagaacaaaacccccgctccgattcaaatcacagcggagcaaattct |
34787561 |
T |
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| Q |
116 |
tcgtgaagctagggagcgtcaagaagctgagatacgtcctccaaagcagaaaatcaccgattcaaccgaactcggcgagtatcgtctccggaaacgaaag |
215 |
Q |
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| T |
34787562 |
tcgtgaagctagggagcgtcaagaagctgagatacgtcctccaaagcagaaaatcaccgattcaaccgaactcggcgagtatcgtctccggaaacgaaag |
34787661 |
T |
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| Q |
216 |
gaattcgaggatttaattc |
234 |
Q |
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| T |
34787662 |
gaattcgaggatttaattc |
34787680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 2293735 - 2293519
Alignment:
| Q |
16 |
gttacctcactcgaaaagacactgaagtaaaacttccacgtccaactagggttaagaacaaaacccccgctccgattcaaatcacagcggagcaaattct |
115 |
Q |
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||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
2293735 |
gttacctcactcgaaaagataccgaagtcaagcttccacgtccaactagggttaagaacaaaacccccgctccaattcaaatcacagcggagcagattct |
2293636 |
T |
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| Q |
116 |
tcgtgaagctagggagcgtcaagaagctgagatacgtcctccaaagcagaaaatcaccgattcaaccgaactcggcgagtatcgtctccggaaacgaaag |
215 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
2293635 |
ccgcgaagctagggagcgtcaagaagctgagatccgtcctccaaagcagaaaatcaccgattcaacagaactcggcgagtatcgtctccggaaaagaaag |
2293536 |
T |
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| Q |
216 |
gaattcgaggatttaat |
232 |
Q |
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| T |
2293535 |
gaattcgaggatttaat |
2293519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 33636356 - 33636242
Alignment:
| Q |
57 |
ccaactagggttaagaacaaaacccccgctccgattcaaatcacagcggagcaaattcttcgtgaagctagggagcgtcaagaagctgagatacgtcctc |
156 |
Q |
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|||||||||||||||||||||| ||| || || |||||||||||||||||||| |||||||| |||||||||| | ||||| || | || ||||||| |
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| T |
33636356 |
ccaactagggttaagaacaaaaaccctgcacccattcaaatcacagcggagcagattcttcgcgaagctagggcactccaagagcctaaaatccgtcctc |
33636257 |
T |
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| Q |
157 |
caaagcagaaaatca |
171 |
Q |
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||||||||||||||| |
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| T |
33636256 |
caaagcagaaaatca |
33636242 |
T |
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