View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17248_low_5 (Length: 632)

Name: NF17248_low_5
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17248_low_5
NF17248_low_5
[»] chr7 (5 HSPs)
chr7 (100-394)||(22883937-22884248)
chr7 (135-217)||(3367611-3367693)
chr7 (162-217)||(7710916-7710971)
chr7 (476-539)||(22883702-22883765)
chr7 (434-472)||(22883888-22883926)
[»] chr4 (4 HSPs)
chr4 (135-217)||(54188523-54188605)
chr4 (135-217)||(8570573-8570655)
chr4 (162-216)||(28462465-28462519)
chr4 (162-203)||(2550273-2550314)
[»] chr6 (4 HSPs)
chr6 (341-399)||(30947274-30947332)
chr6 (162-216)||(7600004-7600058)
chr6 (170-207)||(12038109-12038146)
chr6 (170-207)||(20654812-20654849)
[»] chr3 (2 HSPs)
chr3 (135-217)||(28696533-28696615)
chr3 (162-217)||(23361688-23361743)
[»] chr8 (1 HSPs)
chr8 (156-207)||(23241019-23241070)
[»] chr5 (1 HSPs)
chr5 (162-217)||(19611249-19611304)
[»] chr2 (1 HSPs)
chr2 (162-217)||(45402101-45402156)
[»] chr1 (1 HSPs)
chr1 (156-200)||(49101208-49101252)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 100 - 394
Target Start/End: Complemental strand, 22884248 - 22883937
Alignment:
Q  100 atacggaagtaacagttcatccacctcattcctggataagcacacaatcgcaacata---gagtaaaatttcattgagtcaaattatcaaacacctcaca 196  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||    
T  22884248 atacggaaataacagttcatccacctaattcctggataagcacacaattgcaaaataatagagtaaaatttcattgagtcaaattatcaaacacctcaca 22884149  T
Q  197 cgcaacacaataataccttgccggaggaaaaaaggaagaagagtaagagagactcacataaa--tgc---tgccacatccaaggtg-----ttc-tgatg 285  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||  |||   ||  ||||| | | ||     |||  | ||    
T  22884148 cgcaacacaataataagttgccagaggaaaaaaggaagaagagtaagagagactcacataaagctgcgattggaacatcaatgctgccacattcaaggtg 22884049  T
Q  286 attgccgaattcgatgaagattagataaatatatgaaatcttctcagcaaactatcatgaattgagataatatcctccatatttggaa--ca--ctaaga 381  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  ||| |||||| | |||||||||||  ||  ||||||    
T  22884048 -ttgccgaattcgatgaagattagataaatagatgaaatcttctcagcaaactaccatgaatgtagaaaatatcattcatatttggaagccagcctaaga 22883950  T
Q  382 tgaagattctgag 394  Q
    |||||||||||||    
T  22883949 tgaagattctgag 22883937  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 3367611 - 3367693
Alignment:
Q  135 ataagcacacaatcgcaacatagagtaaaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| |||| | | ||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||    
T  3367611 ataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgc 3367693  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 7710971 - 7710916
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  7710971 aaatttcattgagtcaaattatcaaacacctcatatgcaacacaatcataccttgc 7710916  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 22883765 - 22883702
Alignment:
Q  476 aaatgttgaagtatatatttaaatgcgtgcatgcaacattttttaagcaatgtcactataagac 539  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||||||| ||||| || |||||||    
T  22883765 aaatgttgaagtacatattaaaataagtgcatgcaacattttttaagaaatgttaccataagac 22883702  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 472
Target Start/End: Complemental strand, 22883926 - 22883888
Alignment:
Q  434 gaattgagcgattgatgatgatggtgaagaatttatgat 472  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  22883926 gaattgggcgattgatgatgatggtgaagaattgatgat 22883888  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 54188523 - 54188605
Alignment:
Q  135 ataagcacacaatcgcaacatagagtaaaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| |||| | | ||| ||||||||||||||||||||||| ||||||| | | ||| ||||||||||||||||    
T  54188523 ataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgc 54188605  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 8570655 - 8570573
Alignment:
Q  135 ataagcacacaatcgcaacatagagtaaaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| |||| | | ||| ||||||||||| ||||||||||| ||||||| | | ||| ||||||||||||||||    
T  8570655 ataagcacacaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgc 8570573  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 28462465 - 28462519
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttg 216  Q
    ||||||||||||| ||| ||||||||||||||  | |||||||||||||||||||    
T  28462465 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 28462519  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 2550273 - 2550314
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaaca 203  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  2550273 aaatttcattgagtcaaattatcaaacacctcatatgcaaca 2550314  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 30947332 - 30947274
Alignment:
Q  341 catgaattgagataatatcctccatatttggaacactaagatgaagattctgaggcaaa 399  Q
    |||||||||||| ||||||||  ||||||||||| ||||||||||||||||||| ||||    
T  30947332 catgaattgagaaaatatccttgatatttggaaccctaagatgaagattctgagacaaa 30947274  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 7600058 - 7600004
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttg 216  Q
    ||||||||||||| ||| ||||||||||||||  | |||||||||||||||||||    
T  7600058 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 7600004  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 12038109 - 12038146
Alignment:
Q  170 ttgagtcaaattatcaaacacctcacacgcaacacaat 207  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  12038109 ttgagtcaaattatcaaacacttcatacgcaacacaat 12038146  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 20654849 - 20654812
Alignment:
Q  170 ttgagtcaaattatcaaacacctcacacgcaacacaat 207  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  20654849 ttgagtcaaattatcaaacacttcatacgcaacacaat 20654812  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 28696615 - 28696533
Alignment:
Q  135 ataagcacacaatcgcaacatagagtaaaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| |||| | | ||| ||||||||||| ||||||||||| ||||||| | | ||| ||||||||||||||||    
T  28696615 ataagcacacaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgc 28696533  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 23361743 - 23361688
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| ||| ||||||||||||||  | ||||||||||||||||||||    
T  23361743 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 23361688  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 23241070 - 23241019
Alignment:
Q  156 agagtaaaatttcattgagtcaaattatcaaacacctcacacgcaacacaat 207  Q
    ||||| ||||||||||||||||||||||||||||| ||| | ||||||||||    
T  23241070 agagtcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat 23241019  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 19611304 - 19611249
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| ||| ||||||||||||||  | ||||||||||||||||||||    
T  19611304 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 19611249  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 45402156 - 45402101
Alignment:
Q  162 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataataccttgc 217  Q
    ||||||||||||| ||| ||||||||||||||  | ||||||||||||||||||||    
T  45402156 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 45402101  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 49101252 - 49101208
Alignment:
Q  156 agagtaaaatttcattgagtcaaattatcaaacacctcacacgca 200  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||    
T  49101252 agagtaaaatttcattgagtcgatttatcaaacacctcatacgca 49101208  T

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