View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_50 (Length: 222)
Name: NF17248_low_50
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 4977286 - 4977088
Alignment:
| Q |
11 |
aagaatatgaagaagaaaaattaatggtggaagtatata--gattgaaaaagtacattataaaaatcatgattatcagtttcaatagannnnnnnctagt |
108 |
Q |
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| T |
4977286 |
aagaaaatgaagaagaaaaattaatggtggaagtatatatagattgaaaaagtatattataaaaatcatgattatcagtttcaatagatttttttctagt |
4977187 |
T |
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| Q |
109 |
atgaattgaagtgttcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaaggagaaagtgaataaaat |
208 |
Q |
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| T |
4977186 |
atgaattaaagtattcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaa-gagaaagtgaataaaat |
4977088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 4995193 - 4994995
Alignment:
| Q |
11 |
aagaatatgaagaagaaaaattaatggtggaagtatata--gattgaaaaagtacattataaaaatcatgattatcagtttcaatagannnnnnnctagt |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
4995193 |
aagaaaatgaagaagaaaaattaatggtggaagtatatatagattgaaaaagtatattataaaaatcatgattatcagtttcaatagatttttttctagt |
4995094 |
T |
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| Q |
109 |
atgaattgaagtgttcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaaggagaaagtgaataaaat |
208 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4995093 |
atgaattaaagtattcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaa-gagaaagtgaataaaat |
4994995 |
T |
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