View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17248_low_6 (Length: 488)
Name: NF17248_low_6
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 6704149 - 6704461
Alignment:
| Q |
15 |
tagtataaaagagtgtattgaattgtgtattgtttttgtgctgagatgtttcaagaattgatgaaaggaagaacatctcctatcatgtaatttggttaga |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704149 |
tagtataaaagagtgtatcgaattgtgtaatgtttgtgtgctgagatgtttcaagaattgatgaaaggaagaacatctcctatcatgtaatttggttaga |
6704248 |
T |
|
| Q |
115 |
aatcaatgacannnnnnn--agaggaagatggcaaatatgaaagaggtggtagatatttttaaaagaaaatatagataatgataaaagaatatcatggtc |
212 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704249 |
aatcaatgacatttttttttagaggaagatggcgaatatgaaagaggtggtagatatttttaaaagaaaatatagataatgataaaagaatatcatggtc |
6704348 |
T |
|
| Q |
213 |
ccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcatttctcacatttataaattagttttaaaatggttcagttaggttcaactcaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6704349 |
ccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcattcctcacatttacaaattagttttaaaatggttgagttaggttcaactcaaa |
6704448 |
T |
|
| Q |
313 |
acaatgcattatg |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
6704449 |
gtaatgcattatg |
6704461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 378 - 471
Target Start/End: Original strand, 6704515 - 6704608
Alignment:
| Q |
378 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgaatagttacactacacctaacttgataatacatgaattcca |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704515 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgtatagttacactacacctaacttgataatacatgaattcca |
6704608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University