View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_8 (Length: 471)
Name: NF17248_low_8
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 455
Target Start/End: Original strand, 36263816 - 36264260
Alignment:
| Q |
11 |
cataggtgttattggcaagagtgaagtagttttcatcctcagtcttcaatgtgtatgaggaattatgctggtagtagtgaccggagcaataacagttaac |
110 |
Q |
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| T |
36263816 |
cataggtgttattggcaagagtgaagtagttttcatcctcagtcttcaatgtgtatgaggaattatgctggtagtagtgaccggagcaataacagttaac |
36263915 |
T |
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| Q |
111 |
tggtacagtaatcatggtgtccgtcggaataggatcaacatatgagatgttgttggcattggctattagagggactgatgagttcaagagataagctatg |
210 |
Q |
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| T |
36263916 |
tggtacagtaatcatggtgtccgtcggaataggatcaacatatgagatgttgttggcattggcaattagagggactgttgagttcaagagataagctatg |
36264015 |
T |
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| Q |
211 |
gtggctggagtgttgtaatgaggagggcttgatttgaaggtgaggtaagattgacaggagttgatgctgttgcagatattaccatatgtagatttggaag |
310 |
Q |
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| T |
36264016 |
gtggctggagtgttgtaatgaggagggcttgatttgaaggtgaggtaagattgacaggagttgatgctgttgcagatattaccatatgtagatttggaag |
36264115 |
T |
|
| Q |
311 |
ggtcatcacaatctagttgatggttgtctagatattcttgctgagattttgtttgtgggatgtggaaattaagcaataagattagagtaactatggtagc |
410 |
Q |
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| T |
36264116 |
ggtcatcacaatctagttgatggttgtctagatattcttgctgagattttgtttgtgggatgtggaaattaagcaataagattagagtaagtatggtagc |
36264215 |
T |
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| Q |
411 |
actgaataatgtaaccatgattctcattgaagttgaggtaaaact |
455 |
Q |
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| T |
36264216 |
actgaataatgtaaccatgattctcattgaagttgaggtaaaact |
36264260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 36256051 - 36256469
Alignment:
| Q |
11 |
cataggtgttattggcaagagtgaagta--gttttcatcctcagtcttcaatgtgtatgaggaattatgctggtagtagtgaccggagcaataacagtta |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||| |||| | ||| |||||| || ||| | |||| |
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| T |
36256051 |
cataggtgttattggcaagagtgaagtatagttttcatcctcagttttcaagatgtatcaggaattgtgctagaagtggtgacctgaacaaacatagttt |
36256150 |
T |
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| Q |
109 |
actggtacagtaatcatggtgtccgtcggaataggatcaacatatgagatgttgttggcattggctattagagggactgatgagttcaagagataagcta |
208 |
Q |
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| T |
36256151 |
actgggacagtgatcacggtgtcagtcggaatagggtctccatctgagataatgttggcattggctatgagagggactgtggagttcgagagataagata |
36256250 |
T |
|
| Q |
209 |
-----tggtggctggagtgttgtaatgaggagggcttgatttgaaggtgaggtaagattgacaggagttgatgctgttgcagatattaccatatgtagat |
303 |
Q |
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|||||| |||||||||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||||||||| | |
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| T |
36256251 |
agctgtggtggttggagtgttgtattgaggagggtttgatttgaatgtgaggta-------------------ctgttgcaaatattaccatatgtataa |
36256331 |
T |
|
| Q |
304 |
ttggaagggtcatcacaatctagttgatggttgtctagatattcttgctgagattttgtttgtgggatgtggaaattaagcaataagattagagtaacta |
403 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||| | ||| |||||||||||| |
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| T |
36256332 |
ttggaggggacatcacaatctagttgaaagttgtctagatagtcttgctgagattttgtttgtggtatgtggaaatcaagaattaaaattagagtaactg |
36256431 |
T |
|
| Q |
404 |
tggtagcactgaataatgtaaccatgattctcattgaa |
441 |
Q |
| |
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||||||||| |||||||| | |||||||| |||||||| |
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| T |
36256432 |
tggtagcacagaataatgaacccatgattatcattgaa |
36256469 |
T |
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