View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17248_low_9 (Length: 461)
Name: NF17248_low_9
Description: NF17248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17248_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 125 - 373
Target Start/End: Original strand, 13264054 - 13264300
Alignment:
| Q |
125 |
aacaagaaggaatgtttttgaatgaaaattggaaggaaaaagataaggttttga------agaagacgagaataataaggtttgtggatttggttttgtt |
218 |
Q |
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| T |
13264054 |
aacaagaaggaatgtttttgaatgaaaattggtaggaaaaagataaggttttgattttgaagaagacgagaataataaggtttgtggatttggttttgtt |
13264153 |
T |
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| Q |
219 |
ttgaaatttgaaacggttctgtttcggtgtttcccgctattataagttaaacgagaacaaaaatattccttctctttctgtacaccgacggtatacgtgt |
318 |
Q |
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| T |
13264154 |
ttgaaatttgaaacggttctgtt--------tcccgctattataagttaaacgagaacaagaatattccttctctttctgtacaccgacggtatacgtgt |
13264245 |
T |
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| Q |
319 |
atgccacttttacacttttatacaagataaatatttacgtaccatgatttattta |
373 |
Q |
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| T |
13264246 |
atgccacttttacacttttatacaagataaatatttacgtaccatgattttttta |
13264300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 13264027 - 13264061
Alignment:
| Q |
61 |
cttctctgttttgtttcaaagaacaacaacaagaa |
95 |
Q |
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| T |
13264027 |
cttctctgttttgtttcaaacaacaacaacaagaa |
13264061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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